miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30705 5' -60.1 NC_006552.1 + 46906 0.66 0.470226
Target:  5'- --aGCCGgcaacaccUGGCCucGCCCGggcgcaGCACUGGa -3'
miRNA:   3'- aagCGGC--------ACCGGu-CGGGU------UGUGACCa -5'
30705 5' -60.1 NC_006552.1 + 36042 0.66 0.470226
Target:  5'- -aUGCCGUccCCAuGCCUGGCGCUGGa -3'
miRNA:   3'- aaGCGGCAccGGU-CGGGUUGUGACCa -5'
30705 5' -60.1 NC_006552.1 + 61733 0.66 0.460451
Target:  5'- cUCGCac--GCCGGCCCAccauuCGCUGGg -3'
miRNA:   3'- aAGCGgcacCGGUCGGGUu----GUGACCa -5'
30705 5' -60.1 NC_006552.1 + 1619 0.67 0.426186
Target:  5'- aUCGUCGaagccuUGGacaacauccaccacaCCAGCCCGcaGCGCUGGUu -3'
miRNA:   3'- aAGCGGC------ACC---------------GGUCGGGU--UGUGACCA- -5'
30705 5' -60.1 NC_006552.1 + 57966 0.67 0.422472
Target:  5'- -cUGCCGcgGGCCuGCgCCAucaACUGGUg -3'
miRNA:   3'- aaGCGGCa-CCGGuCG-GGUug-UGACCA- -5'
30705 5' -60.1 NC_006552.1 + 35393 0.68 0.326116
Target:  5'- gUUCGCCGgcgGGCCGccaCCCAGCgugacguugcgacuGCUGGa -3'
miRNA:   3'- -AAGCGGCa--CCGGUc--GGGUUG--------------UGACCa -5'
30705 5' -60.1 NC_006552.1 + 50672 0.69 0.312358
Target:  5'- cUUCGCCGUugucgcgGGCC-GCCaucCACUGGUg -3'
miRNA:   3'- -AAGCGGCA-------CCGGuCGGguuGUGACCA- -5'
30705 5' -60.1 NC_006552.1 + 31205 0.69 0.284073
Target:  5'- -aCGCCGUGGUCGGUguacuCCAAgcCAUUGGUc -3'
miRNA:   3'- aaGCGGCACCGGUCG-----GGUU--GUGACCA- -5'
30705 5' -60.1 NC_006552.1 + 38916 0.69 0.284073
Target:  5'- -aUGaCCGUGGCCGcGCCCAGCg--GGUa -3'
miRNA:   3'- aaGC-GGCACCGGU-CGGGUUGugaCCA- -5'
30705 5' -60.1 NC_006552.1 + 53551 0.7 0.277154
Target:  5'- gUCGCCGUcGCCcugccagaGGCCCAGCuucauggcuucGCUGGg -3'
miRNA:   3'- aAGCGGCAcCGG--------UCGGGUUG-----------UGACCa -5'
30705 5' -60.1 NC_006552.1 + 52577 0.72 0.193981
Target:  5'- gUCGCCGgccguaGUCuGCCCGGCGCUGGc -3'
miRNA:   3'- aAGCGGCac----CGGuCGGGUUGUGACCa -5'
30705 5' -60.1 NC_006552.1 + 6835 1.05 0.000645
Target:  5'- uUUCGCCGUGGCCAGCCCAACACUGGUg -3'
miRNA:   3'- -AAGCGGCACCGGUCGGGUUGUGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.