Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30706 | 3' | -52.3 | NC_006552.1 | + | 11427 | 0.65 | 0.901838 |
Target: 5'- -gACCggCCAGCAGcaggagcgcaccGAGUGgcaccgggucgugcUCUUUGGCCg -3' miRNA: 3'- caUGG--GGUCGUU------------CUCAU--------------AGAAGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 48545 | 0.66 | 0.888954 |
Target: 5'- cUACCgCCGGCAAGGGaaaacaggCUUCccaacacaccaguGGCCa -3' miRNA: 3'- cAUGG-GGUCGUUCUCaua-----GAAG-------------CCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 33195 | 0.66 | 0.87441 |
Target: 5'- --uCUCCGGCugcgcGGUGUCcuugUCGGCCa -3' miRNA: 3'- cauGGGGUCGuuc--UCAUAGa---AGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 36305 | 0.67 | 0.840814 |
Target: 5'- -gGCCCCAGCGguauucuuccuGGAcgGUGcUCUggaaucCGGCCg -3' miRNA: 3'- caUGGGGUCGU-----------UCU--CAU-AGAa-----GCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 27233 | 0.67 | 0.83183 |
Target: 5'- -gGCCUUGGCcAGGGcGUCUUgcaCGGCCu -3' miRNA: 3'- caUGGGGUCGuUCUCaUAGAA---GCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 59998 | 0.68 | 0.803623 |
Target: 5'- cGgcCCCCAGUucuucggcaGAGAGcaGUC-UCGGCCu -3' miRNA: 3'- -CauGGGGUCG---------UUCUCa-UAGaAGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 32003 | 0.68 | 0.783878 |
Target: 5'- gGUugUCCAGguGGAGUugcaCgcCGGCCa -3' miRNA: 3'- -CAugGGGUCguUCUCAua--GaaGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 38905 | 0.69 | 0.721133 |
Target: 5'- -cGCgCCCAGCGGGuAGUcgC--CGGCCa -3' miRNA: 3'- caUG-GGGUCGUUC-UCAuaGaaGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 51678 | 0.69 | 0.721133 |
Target: 5'- -cACCCCGGCAAG-GUGcg--CGGUCu -3' miRNA: 3'- caUGGGGUCGUUCuCAUagaaGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 38678 | 0.7 | 0.66179 |
Target: 5'- cUGCCaCCAGCAgcggcggcgccGGGGUGUCcagcgucaggcgcUCGGCCu -3' miRNA: 3'- cAUGG-GGUCGU-----------UCUCAUAGa------------AGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 56729 | 0.71 | 0.632812 |
Target: 5'- cUGCUUCAGCAGGAuGUccgccuUCUcgUCGGCCg -3' miRNA: 3'- cAUGGGGUCGUUCU-CAu-----AGA--AGCCGG- -5' |
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30706 | 3' | -52.3 | NC_006552.1 | + | 7034 | 1.13 | 0.001156 |
Target: 5'- cGUACCCCAGCAAGAGUAUCUUCGGCCg -3' miRNA: 3'- -CAUGGGGUCGUUCUCAUAGAAGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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