miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30706 3' -52.3 NC_006552.1 + 11427 0.65 0.901838
Target:  5'- -gACCggCCAGCAGcaggagcgcaccGAGUGgcaccgggucgugcUCUUUGGCCg -3'
miRNA:   3'- caUGG--GGUCGUU------------CUCAU--------------AGAAGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 48545 0.66 0.888954
Target:  5'- cUACCgCCGGCAAGGGaaaacaggCUUCccaacacaccaguGGCCa -3'
miRNA:   3'- cAUGG-GGUCGUUCUCaua-----GAAG-------------CCGG- -5'
30706 3' -52.3 NC_006552.1 + 33195 0.66 0.87441
Target:  5'- --uCUCCGGCugcgcGGUGUCcuugUCGGCCa -3'
miRNA:   3'- cauGGGGUCGuuc--UCAUAGa---AGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 36305 0.67 0.840814
Target:  5'- -gGCCCCAGCGguauucuuccuGGAcgGUGcUCUggaaucCGGCCg -3'
miRNA:   3'- caUGGGGUCGU-----------UCU--CAU-AGAa-----GCCGG- -5'
30706 3' -52.3 NC_006552.1 + 27233 0.67 0.83183
Target:  5'- -gGCCUUGGCcAGGGcGUCUUgcaCGGCCu -3'
miRNA:   3'- caUGGGGUCGuUCUCaUAGAA---GCCGG- -5'
30706 3' -52.3 NC_006552.1 + 59998 0.68 0.803623
Target:  5'- cGgcCCCCAGUucuucggcaGAGAGcaGUC-UCGGCCu -3'
miRNA:   3'- -CauGGGGUCG---------UUCUCa-UAGaAGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 32003 0.68 0.783878
Target:  5'- gGUugUCCAGguGGAGUugcaCgcCGGCCa -3'
miRNA:   3'- -CAugGGGUCguUCUCAua--GaaGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 38905 0.69 0.721133
Target:  5'- -cGCgCCCAGCGGGuAGUcgC--CGGCCa -3'
miRNA:   3'- caUG-GGGUCGUUC-UCAuaGaaGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 51678 0.69 0.721133
Target:  5'- -cACCCCGGCAAG-GUGcg--CGGUCu -3'
miRNA:   3'- caUGGGGUCGUUCuCAUagaaGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 38678 0.7 0.66179
Target:  5'- cUGCCaCCAGCAgcggcggcgccGGGGUGUCcagcgucaggcgcUCGGCCu -3'
miRNA:   3'- cAUGG-GGUCGU-----------UCUCAUAGa------------AGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 56729 0.71 0.632812
Target:  5'- cUGCUUCAGCAGGAuGUccgccuUCUcgUCGGCCg -3'
miRNA:   3'- cAUGGGGUCGUUCU-CAu-----AGA--AGCCGG- -5'
30706 3' -52.3 NC_006552.1 + 7034 1.13 0.001156
Target:  5'- cGUACCCCAGCAAGAGUAUCUUCGGCCg -3'
miRNA:   3'- -CAUGGGGUCGUUCUCAUAGAAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.