Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30706 | 5' | -63 | NC_006552.1 | + | 557 | 0.66 | 0.343698 |
Target: 5'- -cGGCCGAcGCUguuCGCcGCGCCGccGGUc -3' miRNA: 3'- gaCCGGCUuCGGu--GCGaCGCGGC--CCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 2227 | 0.69 | 0.218039 |
Target: 5'- aCUGGCCGgcGCCguucuucugccgGCGgacCUGCGCCGccaGGUg -3' miRNA: 3'- -GACCGGCuuCGG------------UGC---GACGCGGC---CCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 3507 | 0.67 | 0.31052 |
Target: 5'- cCUGGCCGcucGaCCACGCcggcauccucaccGCGCgCGGGUa -3' miRNA: 3'- -GACCGGCuu-C-GGUGCGa------------CGCG-GCCCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 3708 | 0.67 | 0.328307 |
Target: 5'- cCUGGCCGGucGaCUACGUgcGCGCCcGGGc -3' miRNA: 3'- -GACCGGCUu-C-GGUGCGa-CGCGG-CCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 5148 | 0.66 | 0.359601 |
Target: 5'- gUGGuuGggGCUGCGCUcgaggccugcgGCGgUCGGGc -3' miRNA: 3'- gACCggCuuCGGUGCGA-----------CGC-GGCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 6258 | 0.67 | 0.306189 |
Target: 5'- -cGGCCagccuuGCCACGUUGCGgCGGa- -3' miRNA: 3'- gaCCGGcuu---CGGUGCGACGCgGCCca -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 6997 | 1.07 | 0.0003 |
Target: 5'- cCUGGCCGAAGCCACGCUGCGCCGGGUg -3' miRNA: 3'- -GACCGGCUUCGGUGCGACGCGGCCCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 12253 | 0.66 | 0.37601 |
Target: 5'- cCUGcGCCGgcGCC-CGCcgccggUGCGgcauCCGGGUg -3' miRNA: 3'- -GAC-CGGCuuCGGuGCG------ACGC----GGCCCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 12538 | 0.66 | 0.351586 |
Target: 5'- uCUGGCCGGAGUaucgGCGCUGUGaaauuCGGu- -3' miRNA: 3'- -GACCGGCUUCGg---UGCGACGCg----GCCca -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 12885 | 0.66 | 0.343698 |
Target: 5'- -cGGCCuGAcuAGCCAC-CUcGCGCCGGc- -3' miRNA: 3'- gaCCGG-CU--UCGGUGcGA-CGCGGCCca -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 12953 | 0.67 | 0.313433 |
Target: 5'- cCUGGCCaacagcaaGGGCCaaACGCUGaaucuGCCGGGc -3' miRNA: 3'- -GACCGGc-------UUCGG--UGCGACg----CGGCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 19221 | 0.66 | 0.335169 |
Target: 5'- -cGGUgaacugcaugucaCGAAGCCAUGCgcaccuuuUGgGCCGGGa -3' miRNA: 3'- gaCCG-------------GCUUCGGUGCG--------ACgCGGCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 26243 | 0.7 | 0.191753 |
Target: 5'- -cGGCCGGAcGCCAgCGCgauguugUGCGCCaGGUu -3' miRNA: 3'- gaCCGGCUU-CGGU-GCG-------ACGCGGcCCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 30371 | 0.69 | 0.2349 |
Target: 5'- -cGGCCGAGGCgGCGCagGuCGuaGGGg -3' miRNA: 3'- gaCCGGCUUCGgUGCGa-C-GCggCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 31979 | 0.71 | 0.178079 |
Target: 5'- -cGGCCaGGAuGCCGCGCUGCaugucuuCCGGGc -3' miRNA: 3'- gaCCGG-CUU-CGGUGCGACGc------GGCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 32451 | 0.66 | 0.37601 |
Target: 5'- aUGGuuGAGGaaucgaCGCGCcagGuCGCCGGGc -3' miRNA: 3'- gACCggCUUCg-----GUGCGa--C-GCGGCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 38736 | 0.7 | 0.207381 |
Target: 5'- -gGGCCGcgcAGCCACGCcacagccGCGCCGuaGGUg -3' miRNA: 3'- gaCCGGCu--UCGGUGCGa------CGCGGC--CCA- -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 39642 | 0.67 | 0.29837 |
Target: 5'- -cGGCCGAaguacucgccaccGGCCaguACGCUGaGCCGcGGg -3' miRNA: 3'- gaCCGGCU-------------UCGG---UGCGACgCGGC-CCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 40476 | 0.73 | 0.126925 |
Target: 5'- -gGGUCGuAGGCCACcaGCcgGCGCCGGGc -3' miRNA: 3'- gaCCGGC-UUCGGUG--CGa-CGCGGCCCa -5' |
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30706 | 5' | -63 | NC_006552.1 | + | 42929 | 0.66 | 0.351586 |
Target: 5'- cCUGGCgCGGAGCCGguCGCU-CGCCGc-- -3' miRNA: 3'- -GACCG-GCUUCGGU--GCGAcGCGGCcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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