miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30707 5' -59.8 NC_006552.1 + 15412 0.66 0.53413
Target:  5'- uUCGUCcacGGCCaaauUGAaCUGGCCUAUGCg -3'
miRNA:   3'- uAGCAGa--CCGG----ACUcGGCUGGGUGCG- -5'
30707 5' -59.8 NC_006552.1 + 46286 0.67 0.464324
Target:  5'- cAUCGaugUUGGCCUGGGCCuuCgCCAUGg -3'
miRNA:   3'- -UAGCa--GACCGGACUCGGcuG-GGUGCg -5'
30707 5' -59.8 NC_006552.1 + 54865 0.67 0.445253
Target:  5'- ----cCUGGCC-GAGCCG-CCCAUGg -3'
miRNA:   3'- uagcaGACCGGaCUCGGCuGGGUGCg -5'
30707 5' -59.8 NC_006552.1 + 34400 0.67 0.435883
Target:  5'- uUCGUCUGGCCaGuAGCCuuucgccugGugCCACuggGCa -3'
miRNA:   3'- uAGCAGACCGGaC-UCGG---------CugGGUG---CG- -5'
30707 5' -59.8 NC_006552.1 + 29031 0.67 0.426629
Target:  5'- cAUCGgcgCUGGCCUcgccagcaucGCCGgcACCCGCGUc -3'
miRNA:   3'- -UAGCa--GACCGGAcu--------CGGC--UGGGUGCG- -5'
30707 5' -59.8 NC_006552.1 + 21979 0.68 0.417491
Target:  5'- uUCaUCUGGCCgguuuucAGCCGGCCaaGCGCu -3'
miRNA:   3'- uAGcAGACCGGac-----UCGGCUGGg-UGCG- -5'
30707 5' -59.8 NC_006552.1 + 17276 0.68 0.39081
Target:  5'- gGUCGUCgaagugaacGGCaaaGAGCUgcaGGCCCGCGCc -3'
miRNA:   3'- -UAGCAGa--------CCGga-CUCGG---CUGGGUGCG- -5'
30707 5' -59.8 NC_006552.1 + 7704 0.68 0.382167
Target:  5'- cUUGgaaaugGGCCUGGGCCG-CCCggugaACGCg -3'
miRNA:   3'- uAGCaga---CCGGACUCGGCuGGG-----UGCG- -5'
30707 5' -59.8 NC_006552.1 + 20446 0.68 0.373652
Target:  5'- cUCGUUcGGCUcGGGCCGACCguCGg -3'
miRNA:   3'- uAGCAGaCCGGaCUCGGCUGGguGCg -5'
30707 5' -59.8 NC_006552.1 + 61636 0.7 0.31548
Target:  5'- uUCGUgaucacgccaggugCUGGCC-GAGCCG-CCgGCGCc -3'
miRNA:   3'- uAGCA--------------GACCGGaCUCGGCuGGgUGCG- -5'
30707 5' -59.8 NC_006552.1 + 52541 0.7 0.302955
Target:  5'- --gGUCuUGGCCUGugccuuGGCCuGCUCACGCa -3'
miRNA:   3'- uagCAG-ACCGGAC------UCGGcUGGGUGCG- -5'
30707 5' -59.8 NC_006552.1 + 6905 0.7 0.288713
Target:  5'- gGUCGggcgaaCUGGCCc-AGUCGGCCCACGa -3'
miRNA:   3'- -UAGCa-----GACCGGacUCGGCUGGGUGCg -5'
30707 5' -59.8 NC_006552.1 + 46449 0.7 0.281791
Target:  5'- aGUgGUCcggccugugcaaUGGCCUGuugcuGCCGugCCGCGUc -3'
miRNA:   3'- -UAgCAG------------ACCGGACu----CGGCugGGUGCG- -5'
30707 5' -59.8 NC_006552.1 + 7120 1.08 0.000518
Target:  5'- uAUCGUCUGGCCUGAGCCGACCCACGCc -3'
miRNA:   3'- -UAGCAGACCGGACUCGGCUGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.