Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30708 | 5' | -58.6 | NC_006552.1 | + | 4661 | 0.73 | 0.191072 |
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Target: 5'- -cCCCGUCuCGGCC-AGCAccguucGCCGGCGa -3' miRNA: 3'- auGGGUAGuGUCGGuUCGU------CGGCCGC- -5' |
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| 30708 | 5' | -58.6 | NC_006552.1 | + | 51389 | 0.75 | 0.158478 |
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Target: 5'- cGCCCGacaaCAUAGCCGcuguAGguGCCGGCGc -3' miRNA: 3'- aUGGGUa---GUGUCGGU----UCguCGGCCGC- -5' |
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| 30708 | 5' | -58.6 | NC_006552.1 | + | 20834 | 0.75 | 0.150132 |
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Target: 5'- cAUUCGUCAguGCC-AGCAGCCGGuCGg -3' miRNA: 3'- aUGGGUAGUguCGGuUCGUCGGCC-GC- -5' |
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| 30708 | 5' | -58.6 | NC_006552.1 | + | 1375 | 0.75 | 0.14611 |
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Target: 5'- cGCCCAggcCAGCC-AGCcGCCGGCGg -3' miRNA: 3'- aUGGGUaguGUCGGuUCGuCGGCCGC- -5' |
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| 30708 | 5' | -58.6 | NC_006552.1 | + | 48566 | 0.76 | 0.127442 |
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Target: 5'- aUACCCAguuUCuuGGCCAAGCuaccGCCGGCa -3' miRNA: 3'- -AUGGGU---AGugUCGGUUCGu---CGGCCGc -5' |
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| 30708 | 5' | -58.6 | NC_006552.1 | + | 34102 | 0.76 | 0.120611 |
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Target: 5'- aGCCCucacaAUCACAGgggcguUCAAGCGGCCGGCa -3' miRNA: 3'- aUGGG-----UAGUGUC------GGUUCGUCGGCCGc -5' |
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| 30708 | 5' | -58.6 | NC_006552.1 | + | 7525 | 1.08 | 0.000587 |
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Target: 5'- gUACCCAUCACAGCCAAGCAGCCGGCGg -3' miRNA: 3'- -AUGGGUAGUGUCGGUUCGUCGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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