Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 25091 | 0.66 | 0.418879 |
|
Target: 5'- -cGGGUcugcuguaCGCCCgucaccaguucGGUGAuGCGCGGCAc- -3' miRNA: 3'- gaCCCG--------GCGGG-----------CCACU-UGCGCCGUuu -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 50658 | 0.66 | 0.418879 |
|
Target: 5'- -cGGGCCGCCauccacuGGUGAugGCcguccaGCAc- -3' miRNA: 3'- gaCCCGGCGGg------CCACUugCGc-----CGUuu -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 46850 | 0.68 | 0.326077 |
|
Target: 5'- cCUGGGCUGCuuGcUGAccacgaaGCGCcGGCGGAg -3' miRNA: 3'- -GACCCGGCGggCcACU-------UGCG-CCGUUU- -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 1985 | 0.68 | 0.2973 |
|
Target: 5'- --uGGCCGCaaCGGUGAAcccuCGCGGCAc- -3' miRNA: 3'- gacCCGGCGg-GCCACUU----GCGCCGUuu -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 8732 | 0.69 | 0.269874 |
|
Target: 5'- gUGGGCCGCCCuGUcaggcAGgGCGGCGu- -3' miRNA: 3'- gACCCGGCGGGcCAc----UUgCGCCGUuu -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 33788 | 0.69 | 0.256943 |
|
Target: 5'- -cGGcGCCGCCaguGGUGGucuuCGCGGUGAGa -3' miRNA: 3'- gaCC-CGGCGGg--CCACUu---GCGCCGUUU- -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 11051 | 0.7 | 0.237907 |
|
Target: 5'- -cGGGCCGCCCGGaGAcagcaccAUGUGGUu-- -3' miRNA: 3'- gaCCCGGCGGGCCaCU-------UGCGCCGuuu -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 42674 | 0.77 | 0.075986 |
|
Target: 5'- gUGGGCCGCCuugugauCGGcGAGCGCGGUAu- -3' miRNA: 3'- gACCCGGCGG-------GCCaCUUGCGCCGUuu -5' |
|||||||
| 30709 | 3' | -61.5 | NC_006552.1 | + | 7692 | 1.06 | 0.000477 |
|
Target: 5'- cCUGGGCCGCCCGGUGAACGCGGCAAAa -3' miRNA: 3'- -GACCCGGCGGGCCACUUGCGCCGUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home