miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30710 3' -52.7 NC_006552.1 + 38715 0.66 0.900566
Target:  5'- gCCGCGcCGuagGUGCCUUga-CUCAACGa -3'
miRNA:   3'- -GGCGUaGCu--UACGGAGaccGAGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 23499 0.66 0.900566
Target:  5'- gCCGCAUCcuugGAGUGCaUCUGuauCUCGAUGc -3'
miRNA:   3'- -GGCGUAG----CUUACGgAGACc--GAGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 56287 0.66 0.886268
Target:  5'- cUCGCGUCGAAgguaCCUC-GGUUgcCAACGg -3'
miRNA:   3'- -GGCGUAGCUUac--GGAGaCCGA--GUUGC- -5'
30710 3' -52.7 NC_006552.1 + 51213 0.66 0.870929
Target:  5'- uCCGCAUCGGAcuucGCUcgCUGGCUgCuGCu -3'
miRNA:   3'- -GGCGUAGCUUa---CGGa-GACCGA-GuUGc -5'
30710 3' -52.7 NC_006552.1 + 25568 0.66 0.862883
Target:  5'- aCUGCGggCGGgaugcccaGUGCCUgCUGGCgacgCAGCa -3'
miRNA:   3'- -GGCGUa-GCU--------UACGGA-GACCGa---GUUGc -5'
30710 3' -52.7 NC_006552.1 + 32225 0.66 0.862883
Target:  5'- gCGCGUCGGc-GUC-CUGGCUCccAGCGu -3'
miRNA:   3'- gGCGUAGCUuaCGGaGACCGAG--UUGC- -5'
30710 3' -52.7 NC_006552.1 + 5531 0.67 0.837327
Target:  5'- aCCGU-UCGccUGCCUCgccGGC-CAACGg -3'
miRNA:   3'- -GGCGuAGCuuACGGAGa--CCGaGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 29448 0.67 0.837327
Target:  5'- uUCGCGUCGAucaGCUUCUGGauaccuGCGg -3'
miRNA:   3'- -GGCGUAGCUua-CGGAGACCgagu--UGC- -5'
30710 3' -52.7 NC_006552.1 + 52008 0.67 0.828363
Target:  5'- aCGC-UCGAAUGCC--UGGCggaacucgUCGGCGg -3'
miRNA:   3'- gGCGuAGCUUACGGagACCG--------AGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 19484 0.67 0.819192
Target:  5'- gCCGCA-CGAGUGUgaugguugCUGuGCUCGACa -3'
miRNA:   3'- -GGCGUaGCUUACGga------GAC-CGAGUUGc -5'
30710 3' -52.7 NC_006552.1 + 32640 0.68 0.800268
Target:  5'- gCCGUAgcgguccuuggCGAAUGCCgccaggCUGGUgaagUCGGCGa -3'
miRNA:   3'- -GGCGUa----------GCUUACGGa-----GACCG----AGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 46413 0.68 0.790536
Target:  5'- gCCGCGUcCGAacGUGCCUg-GGCgUUGGCGg -3'
miRNA:   3'- -GGCGUA-GCU--UACGGAgaCCG-AGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 4455 0.68 0.770585
Target:  5'- gCCGCAgccCGAcuuCCUC-GGCUCAAUGg -3'
miRNA:   3'- -GGCGUa--GCUuacGGAGaCCGAGUUGC- -5'
30710 3' -52.7 NC_006552.1 + 37477 0.68 0.767541
Target:  5'- cCUGC-UCGggUGCCUCcuucaccgcccagaUGGUgugCGGCGu -3'
miRNA:   3'- -GGCGuAGCuuACGGAG--------------ACCGa--GUUGC- -5'
30710 3' -52.7 NC_006552.1 + 57332 0.69 0.750062
Target:  5'- aCGCuuccUCGGacaggGUGCC-CUGGCUCA-CGg -3'
miRNA:   3'- gGCGu---AGCU-----UACGGaGACCGAGUuGC- -5'
30710 3' -52.7 NC_006552.1 + 15328 0.69 0.739613
Target:  5'- gCCGCGUCGGAcGCCcgCUgGGCagAACu -3'
miRNA:   3'- -GGCGUAGCUUaCGGa-GA-CCGagUUGc -5'
30710 3' -52.7 NC_006552.1 + 28999 0.69 0.718402
Target:  5'- cCCGCGUCGGcUGCgaCguugGGCUCGuCGc -3'
miRNA:   3'- -GGCGUAGCUuACGgaGa---CCGAGUuGC- -5'
30710 3' -52.7 NC_006552.1 + 29939 0.69 0.718402
Target:  5'- uCCGguUCagGAAUGCCUCgaccugaucggGGCUCAugccGCGc -3'
miRNA:   3'- -GGCguAG--CUUACGGAGa----------CCGAGU----UGC- -5'
30710 3' -52.7 NC_006552.1 + 26399 0.7 0.68597
Target:  5'- gCCGUAUgGAAUGCCagUGGCaUCcucACGg -3'
miRNA:   3'- -GGCGUAgCUUACGGagACCG-AGu--UGC- -5'
30710 3' -52.7 NC_006552.1 + 30857 0.7 0.662972
Target:  5'- cCCGCAUCGAcgcggaagaucggGUGCUgcuUGGCguUCGACGc -3'
miRNA:   3'- -GGCGUAGCU-------------UACGGag-ACCG--AGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.