miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30711 3' -51.4 NC_006552.1 + 44017 0.68 0.872194
Target:  5'- gCCGCGuCGgUGCCGGCAcaucCGcUACCg -3'
miRNA:   3'- -GGUGUuGCgAUGGCCGUuca-GC-AUGG- -5'
30711 3' -51.4 NC_006552.1 + 47255 0.68 0.872194
Target:  5'- aCCACGguuacccgaggcGCGCcgaguUACCGGC--GUUGUACUg -3'
miRNA:   3'- -GGUGU------------UGCG-----AUGGCCGuuCAGCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 36506 0.68 0.864193
Target:  5'- gCGCcACGCcGCCuGGCAAGaUCG-GCCu -3'
miRNA:   3'- gGUGuUGCGaUGG-CCGUUC-AGCaUGG- -5'
30711 3' -51.4 NC_006552.1 + 2888 0.68 0.85595
Target:  5'- aCCGuCGGCGCga-CGGCAAGUuCGUcgACUu -3'
miRNA:   3'- -GGU-GUUGCGaugGCCGUUCA-GCA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 16850 0.68 0.85595
Target:  5'- uCCGCAuACcCcGCCGGCAccgaGGUCGauUACCg -3'
miRNA:   3'- -GGUGU-UGcGaUGGCCGU----UCAGC--AUGG- -5'
30711 3' -51.4 NC_006552.1 + 44521 0.68 0.852586
Target:  5'- -aACAGCGCcugcucgaugggcGCCGGCA-GUCcuGUGCCg -3'
miRNA:   3'- ggUGUUGCGa------------UGGCCGUuCAG--CAUGG- -5'
30711 3' -51.4 NC_006552.1 + 55391 0.69 0.847472
Target:  5'- -aGCAACaCUGCCGGCGcGGUC--ACCg -3'
miRNA:   3'- ggUGUUGcGAUGGCCGU-UCAGcaUGG- -5'
30711 3' -51.4 NC_006552.1 + 55694 0.69 0.838767
Target:  5'- aCCACAcccaguACGCUGCgCaGCAGGUC--ACCc -3'
miRNA:   3'- -GGUGU------UGCGAUG-GcCGUUCAGcaUGG- -5'
30711 3' -51.4 NC_006552.1 + 57421 0.69 0.838767
Target:  5'- aUCACGuGCGCUAUCGcccuGUGAGUCGagACCg -3'
miRNA:   3'- -GGUGU-UGCGAUGGC----CGUUCAGCa-UGG- -5'
30711 3' -51.4 NC_006552.1 + 37374 0.69 0.829844
Target:  5'- gCGCAGCuucaaGCUcacgGCUGGCAGGcCGUaGCCg -3'
miRNA:   3'- gGUGUUG-----CGA----UGGCCGUUCaGCA-UGG- -5'
30711 3' -51.4 NC_006552.1 + 21106 0.69 0.829844
Target:  5'- gCCGCcGCGCUcuugGCCGGCGccugGGUUgauaGUGCUu -3'
miRNA:   3'- -GGUGuUGCGA----UGGCCGU----UCAG----CAUGG- -5'
30711 3' -51.4 NC_006552.1 + 26737 0.69 0.829844
Target:  5'- uCCugGAUGCcGCUGGU-GGcCGUGCCu -3'
miRNA:   3'- -GGugUUGCGaUGGCCGuUCaGCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 64167 0.69 0.829844
Target:  5'- gUCACGGCGCUGCCgGGCAucaCGcagGCUc -3'
miRNA:   3'- -GGUGUUGCGAUGG-CCGUucaGCa--UGG- -5'
30711 3' -51.4 NC_006552.1 + 545 0.69 0.828941
Target:  5'- uUCGCcGCGCcGCCGGUcagcuucgcgacaGAGUaUGUGCCg -3'
miRNA:   3'- -GGUGuUGCGaUGGCCG-------------UUCA-GCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 8386 0.7 0.801865
Target:  5'- uCCGCucgAGCGCgcCCGGCGgauGGUUGU-CCg -3'
miRNA:   3'- -GGUG---UUGCGauGGCCGU---UCAGCAuGG- -5'
30711 3' -51.4 NC_006552.1 + 39085 0.7 0.782304
Target:  5'- gCCGUAGCGCUcAUCGuGCAGGUgGUagGCCa -3'
miRNA:   3'- -GGUGUUGCGA-UGGC-CGUUCAgCA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 38304 0.71 0.748706
Target:  5'- uCgGCGACGUuguugaUGCCGGCcagcggcaccagggAAGUCGUgGCCa -3'
miRNA:   3'- -GgUGUUGCG------AUGGCCG--------------UUCAGCA-UGG- -5'
30711 3' -51.4 NC_006552.1 + 49746 0.71 0.717029
Target:  5'- gUACGGauucCGCUGCCGGCGccagcgauacagccGGUUGUGCg -3'
miRNA:   3'- gGUGUU----GCGAUGGCCGU--------------UCAGCAUGg -5'
30711 3' -51.4 NC_006552.1 + 54350 0.71 0.70305
Target:  5'- gCUGCGGCGCUgccgacucuucggcuGCCGGCuuGUCGaucACCa -3'
miRNA:   3'- -GGUGUUGCGA---------------UGGCCGuuCAGCa--UGG- -5'
30711 3' -51.4 NC_006552.1 + 21688 0.71 0.698723
Target:  5'- -uGCAGa--UGCCGGCGAuUCGUACCg -3'
miRNA:   3'- ggUGUUgcgAUGGCCGUUcAGCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.