miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30711 5' -57.9 NC_006552.1 + 31290 0.66 0.616393
Target:  5'- cUGGACGAaGGaaAGgGCCGGGAUCa- -3'
miRNA:   3'- -ACCUGCUgUUggUCgUGGCCCUGGac -5'
30711 5' -57.9 NC_006552.1 + 32444 0.66 0.616393
Target:  5'- aGGAauCGACGcGCCAGguCGCCGGGcacgcuacgcACCUGc -3'
miRNA:   3'- aCCU--GCUGU-UGGUC--GUGGCCC----------UGGAC- -5'
30711 5' -57.9 NC_006552.1 + 32504 0.66 0.605713
Target:  5'- uUGGugucguCGcCGGCCGGCG-CGGGGCCg- -3'
miRNA:   3'- -ACCu-----GCuGUUGGUCGUgGCCCUGGac -5'
30711 5' -57.9 NC_006552.1 + 8754 0.66 0.595055
Target:  5'- gUGGGCGAuuCAACCAuGCcUCGuGGGCCg- -3'
miRNA:   3'- -ACCUGCU--GUUGGU-CGuGGC-CCUGGac -5'
30711 5' -57.9 NC_006552.1 + 57983 0.66 0.595055
Target:  5'- -cGGCGcGCAGCgAGCcgcuGCCGcGGGCCUGc -3'
miRNA:   3'- acCUGC-UGUUGgUCG----UGGC-CCUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 2234 0.66 0.59399
Target:  5'- cGcACGAacuGGCCGGCGCCGuucuucugccggcGGACCUGc -3'
miRNA:   3'- aCcUGCUg--UUGGUCGUGGC-------------CCUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 39246 0.67 0.584426
Target:  5'- aGGACuGCAcuACCAgGCACCGGaGCCc- -3'
miRNA:   3'- aCCUGcUGU--UGGU-CGUGGCCcUGGac -5'
30711 5' -57.9 NC_006552.1 + 63246 0.67 0.584426
Target:  5'- gUGGACGACGAg-GGCAUCuaccacGGACCUGc -3'
miRNA:   3'- -ACCUGCUGUUggUCGUGGc-----CCUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 25923 0.67 0.581244
Target:  5'- aGG-UGACAGCCAGCgcuGCCGGcgcaggaagcggcaGGCCUc -3'
miRNA:   3'- aCCuGCUGUUGGUCG---UGGCC--------------CUGGAc -5'
30711 5' -57.9 NC_006552.1 + 59582 0.67 0.531992
Target:  5'- cGGucagcGCGGCAACCAGCACgCGGuuacGGCUg- -3'
miRNA:   3'- aCC-----UGCUGUUGGUCGUG-GCC----CUGGac -5'
30711 5' -57.9 NC_006552.1 + 46922 0.67 0.531992
Target:  5'- cGGuuGGCGcACCAGCAgCCGGcaacACCUGg -3'
miRNA:   3'- aCCugCUGU-UGGUCGU-GGCCc---UGGAC- -5'
30711 5' -57.9 NC_006552.1 + 43174 0.68 0.521697
Target:  5'- gUGGcgGCGuccuCGACCAGgaCACUGGcGGCCUGg -3'
miRNA:   3'- -ACC--UGCu---GUUGGUC--GUGGCC-CUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 43120 0.68 0.521697
Target:  5'- cGcGCGGCAuCCAGCACCaGGGugUa- -3'
miRNA:   3'- aCcUGCUGUuGGUCGUGG-CCCugGac -5'
30711 5' -57.9 NC_006552.1 + 6588 0.68 0.521697
Target:  5'- aUGGugGGCGucggugGCC-GCGCCGGGcagaCUGa -3'
miRNA:   3'- -ACCugCUGU------UGGuCGUGGCCCug--GAC- -5'
30711 5' -57.9 NC_006552.1 + 61617 0.68 0.48135
Target:  5'- cUGGcCGAgCcGCCGGCGCCGgcaGGACUUGc -3'
miRNA:   3'- -ACCuGCU-GuUGGUCGUGGC---CCUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 53011 0.69 0.461751
Target:  5'- aUGGugG-CGGCCAGUGCCuugucGGACCg- -3'
miRNA:   3'- -ACCugCuGUUGGUCGUGGc----CCUGGac -5'
30711 5' -57.9 NC_006552.1 + 3671 0.69 0.423866
Target:  5'- cGGcguCGAUcACCAGgACCuGGACCUGu -3'
miRNA:   3'- aCCu--GCUGuUGGUCgUGGcCCUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 52366 0.7 0.396706
Target:  5'- uUGG-CGACAGCCuucuGCugCGcugcccggcGGGCCUGg -3'
miRNA:   3'- -ACCuGCUGUUGGu---CGugGC---------CCUGGAC- -5'
30711 5' -57.9 NC_006552.1 + 16784 0.71 0.32999
Target:  5'- cGGACGACAACCgaAGC-CCaGGugCUc -3'
miRNA:   3'- aCCUGCUGUUGG--UCGuGGcCCugGAc -5'
30711 5' -57.9 NC_006552.1 + 3535 0.72 0.29268
Target:  5'- cGGACGucCAACCuGGcCGCCGcacGGACCUGg -3'
miRNA:   3'- aCCUGCu-GUUGG-UC-GUGGC---CCUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.