Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30712 | 3' | -54.2 | NC_006552.1 | + | 49850 | 0.69 | 0.665191 |
Target: 5'- -gGCCUGCAgcgccgcaggcugcUCGAGCUUcugUUUGGCcuGGCg -3' miRNA: 3'- ugUGGAUGU--------------AGCUCGGA---AAGCCG--CCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 31825 | 0.69 | 0.654257 |
Target: 5'- -gGCCaGCA-CGGGCCggcccuucguagggCGGCGGCg -3' miRNA: 3'- ugUGGaUGUaGCUCGGaaa-----------GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 38683 | 0.69 | 0.635628 |
Target: 5'- gGCGCCUGCcaccAGCag--CGGCGGCg -3' miRNA: 3'- -UGUGGAUGuagcUCGgaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 40219 | 0.69 | 0.610418 |
Target: 5'- gACGCCUGCuugaaguUCGucaggcuccuggccAGCCgcucgacagCGGCGGCa -3' miRNA: 3'- -UGUGGAUGu------AGC--------------UCGGaaa------GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 29733 | 0.7 | 0.60276 |
Target: 5'- uGCugCUGCGacugcUGAGCgUUUcCGGUGGCg -3' miRNA: 3'- -UGugGAUGUa----GCUCGgAAA-GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 30633 | 0.7 | 0.591842 |
Target: 5'- cACAUCcACGUCcAGCacgUCGGCGGUg -3' miRNA: 3'- -UGUGGaUGUAGcUCGgaaAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 5450 | 0.7 | 0.591842 |
Target: 5'- cGCugCUACGaacugcUCGAGUa---CGGCGGCc -3' miRNA: 3'- -UGugGAUGU------AGCUCGgaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 10912 | 0.71 | 0.548589 |
Target: 5'- cCACCUACGgcuUCGcGCCgc-CGGuCGGCa -3' miRNA: 3'- uGUGGAUGU---AGCuCGGaaaGCC-GCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 63288 | 0.71 | 0.53792 |
Target: 5'- uGCugCUACGaCGuGCUcgaCGGCGGCg -3' miRNA: 3'- -UGugGAUGUaGCuCGGaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 5526 | 0.72 | 0.485786 |
Target: 5'- uCGCCUGCcUCGccGGCCaa-CGGCGGUg -3' miRNA: 3'- uGUGGAUGuAGC--UCGGaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 1166 | 0.72 | 0.485786 |
Target: 5'- cGCGCCUGCAUCGguagAGCaggcaGGCGGg -3' miRNA: 3'- -UGUGGAUGUAGC----UCGgaaagCCGCCg -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 52822 | 0.72 | 0.475643 |
Target: 5'- cGCGCuuCUGCAaCG-GCCUgcgcgUCGGCGGUg -3' miRNA: 3'- -UGUG--GAUGUaGCuCGGAa----AGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 31469 | 0.72 | 0.44587 |
Target: 5'- aACGCCacgACAUCGccaaccGCCagcgCGGCGGCg -3' miRNA: 3'- -UGUGGa--UGUAGCu-----CGGaaa-GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 44637 | 0.73 | 0.407852 |
Target: 5'- cUACCUGCcuggCGAGCaucccCGGCGGCa -3' miRNA: 3'- uGUGGAUGua--GCUCGgaaa-GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 47548 | 0.74 | 0.371928 |
Target: 5'- gGCGCUgGCgAUCGAGUUcgUUGGCGGCg -3' miRNA: 3'- -UGUGGaUG-UAGCUCGGaaAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 3451 | 0.75 | 0.330147 |
Target: 5'- aAguCCUACAUCGAccagcaugccagGCCUguugCGGUGGCg -3' miRNA: 3'- -UguGGAUGUAGCU------------CGGAaa--GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 19866 | 0.76 | 0.263915 |
Target: 5'- uACGCCuUGCAguUCGGGUCUUUCGGgccUGGCa -3' miRNA: 3'- -UGUGG-AUGU--AGCUCGGAAAGCC---GCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 51575 | 0.81 | 0.139146 |
Target: 5'- uGCGCCUugucgGCA-CGGGCCUgcUCGGCGGCc -3' miRNA: 3'- -UGUGGA-----UGUaGCUCGGAa-AGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 8592 | 1.12 | 0.000943 |
Target: 5'- cACACCUACAUCGAGCCUUUCGGCGGCg -3' miRNA: 3'- -UGUGGAUGUAGCUCGGAAAGCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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