miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30712 5' -59.2 NC_006552.1 + 49653 0.66 0.544268
Target:  5'- cCUGCacgccgauugGCGucGGGGCuuGCuGCUGCGCc -3'
miRNA:   3'- -GACGa---------CGCc-UUCCGggCGuCGAUGCG- -5'
30712 5' -59.2 NC_006552.1 + 4762 0.66 0.523592
Target:  5'- -cGCgcacUGGAccAGGCCCGCcaGGC-ACGCa -3'
miRNA:   3'- gaCGac--GCCU--UCCGGGCG--UCGaUGCG- -5'
30712 5' -59.2 NC_006552.1 + 15879 0.66 0.523592
Target:  5'- -cGCUG-GGAAcgcuGGCCgacaaGCcGCUGCGCg -3'
miRNA:   3'- gaCGACgCCUU----CCGGg----CGuCGAUGCG- -5'
30712 5' -59.2 NC_006552.1 + 54437 0.66 0.523592
Target:  5'- gCUGCUGCGcGGugcucaGGGCauGCAGauugGCGCc -3'
miRNA:   3'- -GACGACGC-CU------UCCGggCGUCga--UGCG- -5'
30712 5' -59.2 NC_006552.1 + 52195 0.66 0.513366
Target:  5'- -aGCUGCuc--GGgCCGUAGCUGCGg -3'
miRNA:   3'- gaCGACGccuuCCgGGCGUCGAUGCg -5'
30712 5' -59.2 NC_006552.1 + 46733 0.67 0.473345
Target:  5'- aUGCUGCGGGAacCgCCGCAaGCgccccACGCa -3'
miRNA:   3'- gACGACGCCUUccG-GGCGU-CGa----UGCG- -5'
30712 5' -59.2 NC_006552.1 + 8376 0.67 0.457777
Target:  5'- -cGCgcccgGCGGAuGGUuguCCGCAGCUuccagggauucggcaGCGCc -3'
miRNA:   3'- gaCGa----CGCCUuCCG---GGCGUCGA---------------UGCG- -5'
30712 5' -59.2 NC_006552.1 + 21312 0.67 0.457777
Target:  5'- aUGCgGUGGAccAGGCggugcuugcgaacucCCGCGGCUgcuucagcuccGCGCg -3'
miRNA:   3'- gACGaCGCCU--UCCG---------------GGCGUCGA-----------UGCG- -5'
30712 5' -59.2 NC_006552.1 + 56784 0.67 0.453929
Target:  5'- aCUGCU-CGGGgcucAGGCCgCGCcaGGC-GCGCa -3'
miRNA:   3'- -GACGAcGCCU----UCCGG-GCG--UCGaUGCG- -5'
30712 5' -59.2 NC_006552.1 + 52353 0.68 0.397538
Target:  5'- uCUGCUGCgcugcccGGcGGGCCUGgAuuuccuGCUGCGCc -3'
miRNA:   3'- -GACGACG-------CCuUCCGGGCgU------CGAUGCG- -5'
30712 5' -59.2 NC_006552.1 + 25568 0.68 0.389606
Target:  5'- aCUGCggGCGGGaugcccAGuGCCUGCuGGCgACGCa -3'
miRNA:   3'- -GACGa-CGCCU------UC-CGGGCG-UCGaUGCG- -5'
30712 5' -59.2 NC_006552.1 + 38757 0.69 0.380914
Target:  5'- -aGCgacgGCGccgacuccuGggGGCCgCGCAGCcACGCc -3'
miRNA:   3'- gaCGa---CGC---------CuuCCGG-GCGUCGaUGCG- -5'
30712 5' -59.2 NC_006552.1 + 9804 0.69 0.338644
Target:  5'- -aGCUGaUGGAAGaGUCCaaccucuccaccgGCGGCUACGUa -3'
miRNA:   3'- gaCGAC-GCCUUC-CGGG-------------CGUCGAUGCG- -5'
30712 5' -59.2 NC_006552.1 + 52854 0.7 0.30134
Target:  5'- cCUGaCUGCGGucauccucgAAGGCgUCGCGGC-GCGCu -3'
miRNA:   3'- -GAC-GACGCC---------UUCCG-GGCGUCGaUGCG- -5'
30712 5' -59.2 NC_006552.1 + 5140 0.72 0.235217
Target:  5'- -gGCUGCGcucGAGGCCUGCGGCgguCGg -3'
miRNA:   3'- gaCGACGCc--UUCCGGGCGUCGau-GCg -5'
30712 5' -59.2 NC_006552.1 + 53907 0.73 0.206974
Target:  5'- aUGCcgGCGGAAGGCUC-CAGC-ACGUc -3'
miRNA:   3'- gACGa-CGCCUUCCGGGcGUCGaUGCG- -5'
30712 5' -59.2 NC_006552.1 + 52399 0.73 0.206974
Target:  5'- aCUGCcugGCGGAacucggcgaGGGUCUGCGGgUugGCg -3'
miRNA:   3'- -GACGa--CGCCU---------UCCGGGCGUCgAugCG- -5'
30712 5' -59.2 NC_006552.1 + 38430 0.75 0.150943
Target:  5'- -gGCUGguccgugaccUGGcgcacaGAGGCCCGCAGUUGCGCc -3'
miRNA:   3'- gaCGAC----------GCC------UUCCGGGCGUCGAUGCG- -5'
30712 5' -59.2 NC_006552.1 + 8554 1.1 0.000377
Target:  5'- cCUGCUGCGGAAGGCCCGCAGCUACGCc -3'
miRNA:   3'- -GACGACGCCUUCCGGGCGUCGAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.