miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30715 5' -57.8 NC_006552.1 + 55711 1.05 0.001063
Target:  5'- gAGACGCGCACCCCUGCUGAAAGCCUUc -3'
miRNA:   3'- -UCUGCGCGUGGGGACGACUUUCGGAA- -5'
30715 5' -57.8 NC_006552.1 + 32647 0.76 0.141346
Target:  5'- cGA-GCGCGCUCCUGCUGGgccugcuGAGCCUg -3'
miRNA:   3'- uCUgCGCGUGGGGACGACU-------UUCGGAa -5'
30715 5' -57.8 NC_006552.1 + 20105 0.68 0.440732
Target:  5'- cGGCGCGCAcggaugcCCCCUGCaucagcGCCUUg -3'
miRNA:   3'- uCUGCGCGU-------GGGGACGacuuu-CGGAA- -5'
30715 5' -57.8 NC_006552.1 + 53997 0.68 0.451439
Target:  5'- cAGGCGCGUGgCCCUGgccCUGGccgcGAGCCg- -3'
miRNA:   3'- -UCUGCGCGUgGGGAC---GACU----UUCGGaa -5'
30715 5' -57.8 NC_006552.1 + 36063 0.68 0.461294
Target:  5'- cAGGCGUcUugCCCUGUUGGucGCCa- -3'
miRNA:   3'- -UCUGCGcGugGGGACGACUuuCGGaa -5'
30715 5' -57.8 NC_006552.1 + 17677 0.67 0.501794
Target:  5'- aGGAaGCGCGCgCCCUGCcccauuuccUGuAGAGCCg- -3'
miRNA:   3'- -UCUgCGCGUG-GGGACG---------AC-UUUCGGaa -5'
30715 5' -57.8 NC_006552.1 + 7213 0.67 0.501794
Target:  5'- cGGCGCGCagcgaGCCgCUGCcGcgGGCCUg -3'
miRNA:   3'- uCUGCGCG-----UGGgGACGaCuuUCGGAa -5'
30715 5' -57.8 NC_006552.1 + 8532 0.66 0.543777
Target:  5'- cGACGCGCACCggCUUGCUGuccacGUCg- -3'
miRNA:   3'- uCUGCGCGUGG--GGACGACuuu--CGGaa -5'
30715 5' -57.8 NC_006552.1 + 56627 0.66 0.543777
Target:  5'- cGGCGCGgcuuCugUCCUGCUgcgGAAGGCCc- -3'
miRNA:   3'- uCUGCGC----GugGGGACGA---CUUUCGGaa -5'
30715 5' -57.8 NC_006552.1 + 25704 0.66 0.55446
Target:  5'- -cAUGcCGCACUCCUGCgcagcgauUGAAGGCCc- -3'
miRNA:   3'- ucUGC-GCGUGGGGACG--------ACUUUCGGaa -5'
30715 5' -57.8 NC_006552.1 + 43933 0.66 0.565203
Target:  5'- -cGCGCGCACUuuUGCgcc-AGCCUUa -3'
miRNA:   3'- ucUGCGCGUGGggACGacuuUCGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.