miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30716 5' -55.7 NC_006552.1 + 33080 0.66 0.694097
Target:  5'- aACGcAGCAcGGguGCGUCuuCGCCu-- -3'
miRNA:   3'- -UGC-UCGUuCCguCGUAGugGCGGuuu -5'
30716 5' -55.7 NC_006552.1 + 22790 0.66 0.694097
Target:  5'- uCGaAGCcuGGC-GCcUCGCCGCCGAu -3'
miRNA:   3'- uGC-UCGuuCCGuCGuAGUGGCGGUUu -5'
30716 5' -55.7 NC_006552.1 + 58894 0.66 0.693
Target:  5'- gAUGAGCAcgguaaccaacucGGGCAGCcagCAgCGCCu-- -3'
miRNA:   3'- -UGCUCGU-------------UCCGUCGua-GUgGCGGuuu -5'
30716 5' -55.7 NC_006552.1 + 40699 0.66 0.683102
Target:  5'- cGCGAGuCAAGGCGGUAcuUCGgcucUUGCCAc- -3'
miRNA:   3'- -UGCUC-GUUCCGUCGU--AGU----GGCGGUuu -5'
30716 5' -55.7 NC_006552.1 + 63746 0.66 0.672057
Target:  5'- cCGAGCAGGaCAaCAUgACCGCCGc- -3'
miRNA:   3'- uGCUCGUUCcGUcGUAgUGGCGGUuu -5'
30716 5' -55.7 NC_006552.1 + 11584 0.66 0.672057
Target:  5'- uGCGccGGCccAGGGCcuGCAccaguUCGCCGCCGAAc -3'
miRNA:   3'- -UGC--UCG--UUCCGu-CGU-----AGUGGCGGUUU- -5'
30716 5' -55.7 NC_006552.1 + 5285 0.66 0.660974
Target:  5'- gGCGAGCAAGucGCGGCG-CAUcgagcuaccgCGCCAGu -3'
miRNA:   3'- -UGCUCGUUC--CGUCGUaGUG----------GCGGUUu -5'
30716 5' -55.7 NC_006552.1 + 1917 0.66 0.649863
Target:  5'- gACGuGCucgacGGCGGCGUCGuuGUCGGGa -3'
miRNA:   3'- -UGCuCGuu---CCGUCGUAGUggCGGUUU- -5'
30716 5' -55.7 NC_006552.1 + 58402 0.66 0.638736
Target:  5'- gUGAGCGcgaaGGGCAGCA--ACCGCgAGu -3'
miRNA:   3'- uGCUCGU----UCCGUCGUagUGGCGgUUu -5'
30716 5' -55.7 NC_006552.1 + 44888 0.66 0.638736
Target:  5'- cAUGAGUuGGGCAGCG--GCCGgCGGAg -3'
miRNA:   3'- -UGCUCGuUCCGUCGUagUGGCgGUUU- -5'
30716 5' -55.7 NC_006552.1 + 51541 0.67 0.627603
Target:  5'- uCGAcGcCGAGGCgaAGCGgaUCACCGCCGc- -3'
miRNA:   3'- uGCU-C-GUUCCG--UCGU--AGUGGCGGUuu -5'
30716 5' -55.7 NC_006552.1 + 33377 0.67 0.616473
Target:  5'- cACGGGCcggcccuucguAGGGCGGCGgcgcuuagaCugCGCCGAGg -3'
miRNA:   3'- -UGCUCG-----------UUCCGUCGUa--------GugGCGGUUU- -5'
30716 5' -55.7 NC_006552.1 + 56479 0.67 0.616473
Target:  5'- --aGGCAGGGCGGCGUcCAgUGCCu-- -3'
miRNA:   3'- ugcUCGUUCCGUCGUA-GUgGCGGuuu -5'
30716 5' -55.7 NC_006552.1 + 58735 0.67 0.594266
Target:  5'- gUGA-CGGGGCGGaCAUCACCgaGCCAAu -3'
miRNA:   3'- uGCUcGUUCCGUC-GUAGUGG--CGGUUu -5'
30716 5' -55.7 NC_006552.1 + 9960 0.68 0.565603
Target:  5'- gGCGAuccGCAGGGggucugccugucgauCAGCAccgCACCGCCAc- -3'
miRNA:   3'- -UGCU---CGUUCC---------------GUCGUa--GUGGCGGUuu -5'
30716 5' -55.7 NC_006552.1 + 51925 0.68 0.550314
Target:  5'- -gGAGCAAGacGCGGaaaugCGCCGCCAAc -3'
miRNA:   3'- ugCUCGUUC--CGUCgua--GUGGCGGUUu -5'
30716 5' -55.7 NC_006552.1 + 28020 0.68 0.518013
Target:  5'- gGCGAGUAcGGCGGCGcgccggucuuggUCACCaCCAGc -3'
miRNA:   3'- -UGCUCGUuCCGUCGU------------AGUGGcGGUUu -5'
30716 5' -55.7 NC_006552.1 + 60145 0.69 0.507411
Target:  5'- gGCGGGagaAAGuGCGGCAgaUCGCCgGCCAGc -3'
miRNA:   3'- -UGCUCg--UUC-CGUCGU--AGUGG-CGGUUu -5'
30716 5' -55.7 NC_006552.1 + 52108 0.69 0.496903
Target:  5'- aGCcAGCAAGGCAGCAgagccCAgCGCUAc- -3'
miRNA:   3'- -UGcUCGUUCCGUCGUa----GUgGCGGUuu -5'
30716 5' -55.7 NC_006552.1 + 15600 0.69 0.486493
Target:  5'- cGCGAGCAcGGGCGGCuagcUCAacCCgGCCAGc -3'
miRNA:   3'- -UGCUCGU-UCCGUCGu---AGU--GG-CGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.