Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30717 | 5' | -59.5 | NC_006552.1 | + | 28018 | 0.66 | 0.533065 |
Target: 5'- -gCGGCGAGuacGGcGGCGCGCCGgucUUGGUc -3' miRNA: 3'- caGCCGUUC---CCaCUGCGUGGC---GACCA- -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 26270 | 0.66 | 0.522804 |
Target: 5'- cGUCGGCAGGaugaccGUGGcCGCGCCcaGCgGGUa -3' miRNA: 3'- -CAGCCGUUCc-----CACU-GCGUGG--CGaCCA- -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 15632 | 0.66 | 0.522804 |
Target: 5'- -gCGGCGuucuGGUGGCGCugcucaucCUGCUGGUc -3' miRNA: 3'- caGCCGUuc--CCACUGCGu-------GGCGACCA- -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 25839 | 0.69 | 0.355514 |
Target: 5'- cUCGGCGA---UGGCGcCACUGCUGGUg -3' miRNA: 3'- cAGCCGUUcccACUGC-GUGGCGACCA- -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 4811 | 0.69 | 0.347382 |
Target: 5'- -gCGGCGGGGGcGAUGCGCaCGCgcacaGGg -3' miRNA: 3'- caGCCGUUCCCaCUGCGUG-GCGa----CCa -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 31820 | 0.7 | 0.315446 |
Target: 5'- -aUGGUGAggaacauccucacGGGUGAUGCGCCGCaGGUc -3' miRNA: 3'- caGCCGUU-------------CCCACUGCGUGGCGaCCA- -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 56901 | 0.78 | 0.092858 |
Target: 5'- cGUCGGCGAGGaGUGGuacCGCGCCcgcGCUGGa -3' miRNA: 3'- -CAGCCGUUCC-CACU---GCGUGG---CGACCa -5' |
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30717 | 5' | -59.5 | NC_006552.1 | + | 54306 | 1.07 | 0.000632 |
Target: 5'- gGUCGGCAAGGGUGACGCACCGCUGGUa -3' miRNA: 3'- -CAGCCGUUCCCACUGCGUGGCGACCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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