Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 11466 | 0.66 | 0.936715 |
|
Target: 5'- aCGAAcucgCGCAGUGCAGagcgguacucgcUGCCgGUGAGg -3' miRNA: 3'- -GCUUua--GCGUCGCGUU------------AUGGaCGCUU- -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 19944 | 0.66 | 0.93115 |
|
Target: 5'- uCGAAG-CGUAG-GCGcgGCCUGCGc- -3' miRNA: 3'- -GCUUUaGCGUCgCGUuaUGGACGCuu -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 5286 | 0.67 | 0.898885 |
|
Target: 5'- gCGAgcaAGUCGCGGCGCAucgagcUACC-GCGc- -3' miRNA: 3'- -GCU---UUAGCGUCGCGUu-----AUGGaCGCuu -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 31691 | 0.7 | 0.773378 |
|
Target: 5'- cCGAGAUCuGCAgGCGCGccACCUGCc-- -3' miRNA: 3'- -GCUUUAG-CGU-CGCGUuaUGGACGcuu -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 34247 | 0.71 | 0.697238 |
|
Target: 5'- cCGAGuuGUaCGCGGCGCAGUACUUGaUGGu -3' miRNA: 3'- -GCUU--UA-GCGUCGCGUUAUGGAC-GCUu -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 12359 | 0.72 | 0.626868 |
|
Target: 5'- uCGAAggcGUCGCGGCGCGcuucugcaacgGCCUGCGc- -3' miRNA: 3'- -GCUU---UAGCGUCGCGUua---------UGGACGCuu -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 33577 | 0.73 | 0.572363 |
|
Target: 5'- cCGAAAUaCGCGGCGU----CCUGCGGAu -3' miRNA: 3'- -GCUUUA-GCGUCGCGuuauGGACGCUU- -5' |
|||||||
| 30719 | 5' | -50.7 | NC_006552.1 | + | 53828 | 1.07 | 0.003966 |
|
Target: 5'- cCGAAAUCGCAGCGCAAUACCUGCGAAa -3' miRNA: 3'- -GCUUUAGCGUCGCGUUAUGGACGCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home