miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30720 5' -61.2 NC_006552.1 + 27896 0.68 0.392419
Target:  5'- uGCgCACCGuCGgcuccuCGAUGuCCGG-CGCCCg -3'
miRNA:   3'- cCGaGUGGC-GC------GCUAC-GGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 33424 0.68 0.392419
Target:  5'- cGCUCGCCGUGgaCGAUcacCUGGAgcuUGCCCg -3'
miRNA:   3'- cCGAGUGGCGC--GCUAc--GGCCU---GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 4740 0.68 0.373163
Target:  5'- cGGCgucuccugCACCaGCuucgGCGGUGCCGGcugcgucaccugcgGCGCCa -3'
miRNA:   3'- -CCGa-------GUGG-CG----CGCUACGGCC--------------UGCGGg -5'
30720 5' -61.2 NC_006552.1 + 22245 0.68 0.368247
Target:  5'- uGGCcguaucgaccaccagCACCcugGCGCGGaGCCGGuCGCUCg -3'
miRNA:   3'- -CCGa--------------GUGG---CGCGCUaCGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 52983 0.68 0.367432
Target:  5'- cGUUCAUCgaGCGCGcaGCCuGAUGCCCa -3'
miRNA:   3'- cCGAGUGG--CGCGCuaCGGcCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 16350 0.68 0.351392
Target:  5'- cGGCUgACCGCcaugcagaacCGccGCCGGccCGCCCa -3'
miRNA:   3'- -CCGAgUGGCGc---------GCuaCGGCCu-GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 36102 0.68 0.351392
Target:  5'- cGGCgUCAcCCGCGCccUGCUGcGCGCCa -3'
miRNA:   3'- -CCG-AGU-GGCGCGcuACGGCcUGCGGg -5'
30720 5' -61.2 NC_006552.1 + 14818 0.69 0.335855
Target:  5'- aGCcuUCGCCGaUGUccuugccuucGAUGCUGGGCGCCUu -3'
miRNA:   3'- cCG--AGUGGC-GCG----------CUACGGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 54126 0.69 0.320826
Target:  5'- uGGCgCAUCGUcUGAgcGCCGGGcCGCCCg -3'
miRNA:   3'- -CCGaGUGGCGcGCUa-CGGCCU-GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 48460 0.69 0.320826
Target:  5'- uGGCUCGCUG-GCG-UGuCCGGuugcguUGCCCu -3'
miRNA:   3'- -CCGAGUGGCgCGCuAC-GGCCu-----GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 51984 0.69 0.320826
Target:  5'- uGGCaCGCCaGCaGCGAgagcuUGCCGcGGCGCgCCa -3'
miRNA:   3'- -CCGaGUGG-CG-CGCU-----ACGGC-CUGCG-GG- -5'
30720 5' -61.2 NC_006552.1 + 6171 0.69 0.312053
Target:  5'- uGCUUGCCGCGcgcgcucaaccuugcCcuggucuuucucgaaGAUGCCGGcCGCCCa -3'
miRNA:   3'- cCGAGUGGCGC---------------G---------------CUACGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 57302 0.69 0.306306
Target:  5'- uGGCUCaacgauGCCGCGCGcagugGCCuGGCGCa- -3'
miRNA:   3'- -CCGAG------UGGCGCGCua---CGGcCUGCGgg -5'
30720 5' -61.2 NC_006552.1 + 26164 0.69 0.306306
Target:  5'- cGUUgGCgCGCGCGAUcaGCa-GACGCCCg -3'
miRNA:   3'- cCGAgUG-GCGCGCUA--CGgcCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 25460 0.7 0.299236
Target:  5'- gGGCUUACUgcccaGCGCGAUGUugaGGAUGUgCg -3'
miRNA:   3'- -CCGAGUGG-----CGCGCUACGg--CCUGCGgG- -5'
30720 5' -61.2 NC_006552.1 + 38162 0.7 0.299236
Target:  5'- uGCUgGCCGCGguagcuguUGGUGCUGGgaACGUCCu -3'
miRNA:   3'- cCGAgUGGCGC--------GCUACGGCC--UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 21168 0.7 0.292294
Target:  5'- aGGCgcauccgGCCGCGuCGGUGCCGGcACaUCCg -3'
miRNA:   3'- -CCGag-----UGGCGC-GCUACGGCC-UGcGGG- -5'
30720 5' -61.2 NC_006552.1 + 27843 0.7 0.292294
Target:  5'- uGGCagGCCGUaGCcguccaccuuGAUGCCGGcgucgauguucACGCCCa -3'
miRNA:   3'- -CCGagUGGCG-CG----------CUACGGCC-----------UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 11487 0.7 0.278789
Target:  5'- cGGUacUCGCUGC-CGGUGa-GGAUGCCCa -3'
miRNA:   3'- -CCG--AGUGGCGcGCUACggCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 51379 0.7 0.263877
Target:  5'- uGGCaaaACUuCGCGAgaaguacgcgacgcUGCCGGACGCCa -3'
miRNA:   3'- -CCGag-UGGcGCGCU--------------ACGGCCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.