miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30721 5' -56.4 NC_006552.1 + 59849 0.66 0.692957
Target:  5'- -cCAUCGCGCagGAguUGCUACCGcGGAa -3'
miRNA:   3'- gcGUAGCGCGa-CUacGCGAUGGU-CCU- -5'
30721 5' -56.4 NC_006552.1 + 10839 0.66 0.682223
Target:  5'- uCGC--CGgGCUGcgGCGCUGCCGa-- -3'
miRNA:   3'- -GCGuaGCgCGACuaCGCGAUGGUccu -5'
30721 5' -56.4 NC_006552.1 + 12536 0.66 0.682223
Target:  5'- uCGUAguccUCGCgGCUGAcGCGCUcgGCCAGu- -3'
miRNA:   3'- -GCGU----AGCG-CGACUaCGCGA--UGGUCcu -5'
30721 5' -56.4 NC_006552.1 + 56711 0.66 0.671442
Target:  5'- cCGCGUCGCGCgGGacCGUgGCgAGGAa -3'
miRNA:   3'- -GCGUAGCGCGaCUacGCGaUGgUCCU- -5'
30721 5' -56.4 NC_006552.1 + 22060 0.67 0.636752
Target:  5'- aGUGcUGuCGCUGAUGCGCgcggcauccagcACCAGGGu -3'
miRNA:   3'- gCGUaGC-GCGACUACGCGa-----------UGGUCCU- -5'
30721 5' -56.4 NC_006552.1 + 49268 0.67 0.595525
Target:  5'- gGCA-CGgGCUGcgGCGCuUACguGGGc -3'
miRNA:   3'- gCGUaGCgCGACuaCGCG-AUGguCCU- -5'
30721 5' -56.4 NC_006552.1 + 42319 0.67 0.595525
Target:  5'- gGUAgCGCGCUucuuCGCUACCGGGGc -3'
miRNA:   3'- gCGUaGCGCGAcuacGCGAUGGUCCU- -5'
30721 5' -56.4 NC_006552.1 + 12081 0.68 0.552603
Target:  5'- uCGCAUUGCGCaGuuccCGC-GCCAGGAa -3'
miRNA:   3'- -GCGUAGCGCGaCuac-GCGaUGGUCCU- -5'
30721 5' -56.4 NC_006552.1 + 20903 0.68 0.542007
Target:  5'- gGCAUgGCGauCUGcgGCGC-AUCGGGAa -3'
miRNA:   3'- gCGUAgCGC--GACuaCGCGaUGGUCCU- -5'
30721 5' -56.4 NC_006552.1 + 25658 0.69 0.490179
Target:  5'- gCGCAgaGCGCUGcuaAUGCGUUGCaUAGGGu -3'
miRNA:   3'- -GCGUagCGCGAC---UACGCGAUG-GUCCU- -5'
30721 5' -56.4 NC_006552.1 + 19726 0.69 0.480086
Target:  5'- gGCGUCggccacguugGCGCUGGccgcUGCGC-GCCAGGc -3'
miRNA:   3'- gCGUAG----------CGCGACU----ACGCGaUGGUCCu -5'
30721 5' -56.4 NC_006552.1 + 10751 0.7 0.470094
Target:  5'- gGCGaUGCGCUGcUGCGCggUGCuCAGGGc -3'
miRNA:   3'- gCGUaGCGCGACuACGCG--AUG-GUCCU- -5'
30721 5' -56.4 NC_006552.1 + 59074 0.72 0.342949
Target:  5'- gCGCGUCGCugcguucCUGAUGCGCUAUCAc-- -3'
miRNA:   3'- -GCGUAGCGc------GACUACGCGAUGGUccu -5'
30721 5' -56.4 NC_006552.1 + 5998 0.77 0.158999
Target:  5'- aGCGUUGCGCgGGUGCGCU-CCAGa- -3'
miRNA:   3'- gCGUAGCGCGaCUACGCGAuGGUCcu -5'
30721 5' -56.4 NC_006552.1 + 53352 1.08 0.000985
Target:  5'- uCGCAUCGCGCUGAUGCGCUACCAGGAc -3'
miRNA:   3'- -GCGUAGCGCGACUACGCGAUGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.