miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30723 5' -61.7 NC_006552.1 + 6284 0.66 0.443423
Target:  5'- gCAuGuuGGCCCcuUGGAUAguggcuACgCUGGCCGg -3'
miRNA:   3'- gGU-CggCCGGG--ACCUGU------UG-GACCGGU- -5'
30723 5' -61.7 NC_006552.1 + 6616 0.66 0.44157
Target:  5'- cCCAGCCGGCCCgauacaucgagcGGagccccagGCAGCCcGGaCAc -3'
miRNA:   3'- -GGUCGGCCGGGa-----------CC--------UGUUGGaCCgGU- -5'
30723 5' -61.7 NC_006552.1 + 45365 0.66 0.434202
Target:  5'- gUCGGCCGGUaUCUGGcagcGCGGCCcgGGCUc -3'
miRNA:   3'- -GGUCGGCCG-GGACC----UGUUGGa-CCGGu -5'
30723 5' -61.7 NC_006552.1 + 18288 0.66 0.434202
Target:  5'- gCAGCCGGCaacaCCUGGcCucGCCcgGGCgCAg -3'
miRNA:   3'- gGUCGGCCG----GGACCuGu-UGGa-CCG-GU- -5'
30723 5' -61.7 NC_006552.1 + 22023 0.66 0.4161
Target:  5'- -uGGCgGcGUCCUcgaccaGGACAcuggcgGCCUGGCCAg -3'
miRNA:   3'- ggUCGgC-CGGGA------CCUGU------UGGACCGGU- -5'
30723 5' -61.7 NC_006552.1 + 16369 0.66 0.407224
Target:  5'- aCCGccGCCGGCCCgcccAUAGCCaucccGGCCAg -3'
miRNA:   3'- -GGU--CGGCCGGGacc-UGUUGGa----CCGGU- -5'
30723 5' -61.7 NC_006552.1 + 12855 0.66 0.407224
Target:  5'- cCCGGCgGG-CCUGGAUuuCCUGcugcGCCu -3'
miRNA:   3'- -GGUCGgCCgGGACCUGuuGGAC----CGGu -5'
30723 5' -61.7 NC_006552.1 + 35398 0.66 0.398468
Target:  5'- gCGGuUCGGUCUUGGcuuuguugaugGCAGCCUgGGCCGc -3'
miRNA:   3'- gGUC-GGCCGGGACC-----------UGUUGGA-CCGGU- -5'
30723 5' -61.7 NC_006552.1 + 32320 0.66 0.398468
Target:  5'- gUCGGCCuGGCUCucgUGGAuCAGCCUG-CCGc -3'
miRNA:   3'- -GGUCGG-CCGGG---ACCU-GUUGGACcGGU- -5'
30723 5' -61.7 NC_006552.1 + 59714 0.67 0.389833
Target:  5'- aCCAGgCGGaCCUGauaGACGguuuCCUGGCCc -3'
miRNA:   3'- -GGUCgGCCgGGAC---CUGUu---GGACCGGu -5'
30723 5' -61.7 NC_006552.1 + 23514 0.67 0.381321
Target:  5'- -aAGCUGGUCCUGGACGuaGCa--GCCGa -3'
miRNA:   3'- ggUCGGCCGGGACCUGU--UGgacCGGU- -5'
30723 5' -61.7 NC_006552.1 + 26213 0.67 0.348536
Target:  5'- gCCGGUCGGCa-UGGGCGACaggUGGCgAa -3'
miRNA:   3'- -GGUCGGCCGggACCUGUUGg--ACCGgU- -5'
30723 5' -61.7 NC_006552.1 + 58306 0.68 0.343796
Target:  5'- cCCAGUCGGCCCacGAaccgcuccguaccauCAccuCCUGGCCu -3'
miRNA:   3'- -GGUCGGCCGGGacCU---------------GUu--GGACCGGu -5'
30723 5' -61.7 NC_006552.1 + 64776 0.68 0.340661
Target:  5'- gCCA-CCGacGCCCUGGGCAuCCUG-CCGg -3'
miRNA:   3'- -GGUcGGC--CGGGACCUGUuGGACcGGU- -5'
30723 5' -61.7 NC_006552.1 + 54945 0.68 0.325299
Target:  5'- -gAGCgGGCaCUGGACGACgCUGGUa- -3'
miRNA:   3'- ggUCGgCCGgGACCUGUUG-GACCGgu -5'
30723 5' -61.7 NC_006552.1 + 15857 0.68 0.325299
Target:  5'- uCCAGgCGGCCCUGcagaucgguGACAggAUCUGauGCCAa -3'
miRNA:   3'- -GGUCgGCCGGGAC---------CUGU--UGGAC--CGGU- -5'
30723 5' -61.7 NC_006552.1 + 63900 0.68 0.317813
Target:  5'- cCCAGgaaCUGGCaaugCUGGuucGCAugCUGGCCAg -3'
miRNA:   3'- -GGUC---GGCCGg---GACC---UGUugGACCGGU- -5'
30723 5' -61.7 NC_006552.1 + 49169 0.68 0.317813
Target:  5'- uCCGGCU-GCCCgcacUGcGGCGGCCUGGuCCGg -3'
miRNA:   3'- -GGUCGGcCGGG----AC-CUGUUGGACC-GGU- -5'
30723 5' -61.7 NC_006552.1 + 14303 0.68 0.317813
Target:  5'- uUCGGCgCGGgCCUGGGCcucGGCCUGuaaccucuuuGCCAg -3'
miRNA:   3'- -GGUCG-GCCgGGACCUG---UUGGAC----------CGGU- -5'
30723 5' -61.7 NC_006552.1 + 23632 0.68 0.316332
Target:  5'- uUCAGCCGcgugcacgauuuuucGaCCUUGGACGGCCaguagaacgguccacUGGCCAc -3'
miRNA:   3'- -GGUCGGC---------------C-GGGACCUGUUGG---------------ACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.