Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30723 | 5' | -61.7 | NC_006552.1 | + | 37960 | 0.7 | 0.243994 |
Target: 5'- uCCGGCCuuGGCCa-GGGCGucuugcacgGCCUGGUCGa -3' miRNA: 3'- -GGUCGG--CCGGgaCCUGU---------UGGACCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 43232 | 0.68 | 0.303232 |
Target: 5'- uUCAGCCGGCCaagcgcuUGGAaucgAugCUGGCUc -3' miRNA: 3'- -GGUCGGCCGGg------ACCUg---UugGACCGGu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 45365 | 0.66 | 0.434202 |
Target: 5'- gUCGGCCGGUaUCUGGcagcGCGGCCcgGGCUc -3' miRNA: 3'- -GGUCGGCCG-GGACC----UGUUGGa-CCGGu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 49169 | 0.68 | 0.317813 |
Target: 5'- uCCGGCU-GCCCgcacUGcGGCGGCCUGGuCCGg -3' miRNA: 3'- -GGUCGGcCGGG----AC-CUGUUGGACC-GGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 50337 | 0.7 | 0.2265 |
Target: 5'- gCguGCUGGCCCUGGugGcuccguuuuacGgCUGGCUg -3' miRNA: 3'- -GguCGGCCGGGACCugU-----------UgGACCGGu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 52224 | 1.1 | 0.000249 |
Target: 5'- aCCAGCCGGCCCUGGACAACCUGGCCAa -3' miRNA: 3'- -GGUCGGCCGGGACCUGUUGGACCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 52477 | 0.69 | 0.296137 |
Target: 5'- --cGCCaGCgCgUGGGCAACCUgcGGCCAg -3' miRNA: 3'- gguCGGcCG-GgACCUGUUGGA--CCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 53610 | 0.7 | 0.220909 |
Target: 5'- gCC-GCCGGCUgaGGugGagGCCUGaGCCAu -3' miRNA: 3'- -GGuCGGCCGGgaCCugU--UGGAC-CGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 53995 | 0.7 | 0.25007 |
Target: 5'- gCCAGgCgcguGGCCCUGGc---CCUGGCCGc -3' miRNA: 3'- -GGUCgG----CCGGGACCuguuGGACCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 54945 | 0.68 | 0.325299 |
Target: 5'- -gAGCgGGCaCUGGACGACgCUGGUa- -3' miRNA: 3'- ggUCGgCCGgGACCUGUUG-GACCGgu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 57416 | 0.72 | 0.171247 |
Target: 5'- aCGGCCuGGCCCUGGACGACa---CCGa -3' miRNA: 3'- gGUCGG-CCGGGACCUGUUGgaccGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 58306 | 0.68 | 0.343796 |
Target: 5'- cCCAGUCGGCCCacGAaccgcuccguaccauCAccuCCUGGCCu -3' miRNA: 3'- -GGUCGGCCGGGacCU---------------GUu--GGACCGGu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 59714 | 0.67 | 0.389833 |
Target: 5'- aCCAGgCGGaCCUGauaGACGguuuCCUGGCCc -3' miRNA: 3'- -GGUCgGCCgGGAC---CUGUu---GGACCGGu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 60288 | 0.8 | 0.04308 |
Target: 5'- cCCGGCUGGCCCUGGGCAucggccCCUGGgUg -3' miRNA: 3'- -GGUCGGCCGGGACCUGUu-----GGACCgGu -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 61655 | 0.76 | 0.098202 |
Target: 5'- gCCGGCCGGacguccaaCCUGGccgccGCAcggACCUGGCCGc -3' miRNA: 3'- -GGUCGGCCg-------GGACC-----UGU---UGGACCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 63025 | 0.71 | 0.215437 |
Target: 5'- -uGGCC-GCCCaGcGCAACCUGGCCGc -3' miRNA: 3'- ggUCGGcCGGGaCcUGUUGGACCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 63900 | 0.68 | 0.317813 |
Target: 5'- cCCAGgaaCUGGCaaugCUGGuucGCAugCUGGCCAg -3' miRNA: 3'- -GGUC---GGCCGg---GACC---UGUugGACCGGU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 64444 | 0.69 | 0.269049 |
Target: 5'- cUCGGCCuGGCCgUGGugGGgCUGGUgGa -3' miRNA: 3'- -GGUCGG-CCGGgACCugUUgGACCGgU- -5' |
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30723 | 5' | -61.7 | NC_006552.1 | + | 64776 | 0.68 | 0.340661 |
Target: 5'- gCCA-CCGacGCCCUGGGCAuCCUG-CCGg -3' miRNA: 3'- -GGUcGGC--CGGGACCUGUuGGACcGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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