miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30724 5' -57.3 NC_006552.1 + 41418 0.67 0.577859
Target:  5'- cGCGCCAGUucgGCCgCGUCCGuGGg-GAGCg -3'
miRNA:   3'- aCGUGGUCG---UGG-GCGGGU-CUagUUCG- -5'
30724 5' -57.3 NC_006552.1 + 31705 0.67 0.567146
Target:  5'- cGCGCC---ACCUGCCCGGAcuucuuuucCAGGCg -3'
miRNA:   3'- aCGUGGucgUGGGCGGGUCUa--------GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 43944 0.67 0.567146
Target:  5'- uUGCGCCAGCcuuauACCCGCgCuccuUCA-GCa -3'
miRNA:   3'- -ACGUGGUCG-----UGGGCGgGucu-AGUuCG- -5'
30724 5' -57.3 NC_006552.1 + 21882 0.67 0.566077
Target:  5'- aGCACCAGCGcggcaauggaugcCCCGUCCAc--CAgcAGCg -3'
miRNA:   3'- aCGUGGUCGU-------------GGGCGGGUcuaGU--UCG- -5'
30724 5' -57.3 NC_006552.1 + 56424 0.67 0.556483
Target:  5'- cGCACCGG-ACgCCGCCCug--UggGCg -3'
miRNA:   3'- aCGUGGUCgUG-GGCGGGucuaGuuCG- -5'
30724 5' -57.3 NC_006552.1 + 20549 0.67 0.556483
Target:  5'- cGCACCAcaucUACCUGCCUGG--CGAGCa -3'
miRNA:   3'- aCGUGGUc---GUGGGCGGGUCuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 62767 0.67 0.55542
Target:  5'- cGCGCCuGCGagcgaCGCCUGGAcgacuguUCGAGCu -3'
miRNA:   3'- aCGUGGuCGUgg---GCGGGUCU-------AGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 26243 0.67 0.535341
Target:  5'- cUGCGCCGGUcgGCCCaGCuCCGGuagCGucGGCa -3'
miRNA:   3'- -ACGUGGUCG--UGGG-CG-GGUCua-GU--UCG- -5'
30724 5' -57.3 NC_006552.1 + 51190 0.67 0.535341
Target:  5'- aGCGCCAGUcgucaacuucaACCC-CUCAGAgaUUGAGCu -3'
miRNA:   3'- aCGUGGUCG-----------UGGGcGGGUCU--AGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 21112 0.67 0.535341
Target:  5'- gGCGacggguuauaggUCGGCuGCUCGCCCAGGUugaCGGGCg -3'
miRNA:   3'- aCGU------------GGUCG-UGGGCGGGUCUA---GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 51477 0.67 0.535341
Target:  5'- cGCACCAGCcuggaAgCCGCUCg---CAAGCg -3'
miRNA:   3'- aCGUGGUCG-----UgGGCGGGucuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 8336 0.67 0.535341
Target:  5'- cGCAgcUCAGCAUCgGUCCAGAcgaugccugccUUGAGCa -3'
miRNA:   3'- aCGU--GGUCGUGGgCGGGUCU-----------AGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 52329 0.67 0.535341
Target:  5'- cGCGCCGGCcacGCCgGCaCAGuUCAAGg -3'
miRNA:   3'- aCGUGGUCG---UGGgCGgGUCuAGUUCg -5'
30724 5' -57.3 NC_006552.1 + 32785 0.67 0.534291
Target:  5'- cGCACCuGC-CCUugggugaacaucaGCCCGGAgccauaCAGGCg -3'
miRNA:   3'- aCGUGGuCGuGGG-------------CGGGUCUa-----GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 19177 0.68 0.514488
Target:  5'- cGCuACCGGCGCCCcgaGCCCcc--CAAGUg -3'
miRNA:   3'- aCG-UGGUCGUGGG---CGGGucuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 11940 0.68 0.504185
Target:  5'- cGCGCCAG-GCUCG-CUAGGUCgGAGCg -3'
miRNA:   3'- aCGUGGUCgUGGGCgGGUCUAG-UUCG- -5'
30724 5' -57.3 NC_006552.1 + 21259 0.68 0.504185
Target:  5'- cGCGCCAGCG--UGUCCAGGUCGu-- -3'
miRNA:   3'- aCGUGGUCGUggGCGGGUCUAGUucg -5'
30724 5' -57.3 NC_006552.1 + 16041 0.68 0.504185
Target:  5'- cGCAgCAGCACCagaaagugGCCCAGuagcCGGGUc -3'
miRNA:   3'- aCGUgGUCGUGGg-------CGGGUCua--GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 22708 0.68 0.504185
Target:  5'- cUGaa-CAGCGCCgGCCaCGGA-CAGGCa -3'
miRNA:   3'- -ACgugGUCGUGGgCGG-GUCUaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 56915 0.68 0.493973
Target:  5'- gGUACC-GCGCCCGCgCUGGA-CuGGCg -3'
miRNA:   3'- aCGUGGuCGUGGGCG-GGUCUaGuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.