miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30727 3' -55.1 NC_006552.1 + 33394 0.66 0.780723
Target:  5'- uAGgGCGGCGGCGCuu----AGaCUGCGc -3'
miRNA:   3'- -UCgUGCCGCCGCGcaacuuUC-GAUGC- -5'
30727 3' -55.1 NC_006552.1 + 4755 0.66 0.780723
Target:  5'- cAGCuuCGGCGGUGCc-----GGCUGCGu -3'
miRNA:   3'- -UCGu-GCCGCCGCGcaacuuUCGAUGC- -5'
30727 3' -55.1 NC_006552.1 + 31979 0.66 0.770759
Target:  5'- uGC-CGGUGGUGCucggcgUGAAucuccGGCUGCGc -3'
miRNA:   3'- uCGuGCCGCCGCGca----ACUU-----UCGAUGC- -5'
30727 3' -55.1 NC_006552.1 + 13228 0.66 0.750418
Target:  5'- -cCACuGCGcGCGCGcugcaUGAGGGCUACa -3'
miRNA:   3'- ucGUGcCGC-CGCGCa----ACUUUCGAUGc -5'
30727 3' -55.1 NC_006552.1 + 12329 0.67 0.697685
Target:  5'- cGCuCGGCGGCGCccUGA---CUGCGg -3'
miRNA:   3'- uCGuGCCGCCGCGcaACUuucGAUGC- -5'
30727 3' -55.1 NC_006552.1 + 26525 0.67 0.697685
Target:  5'- cAGCAgCGGCGGCGcCGgggUGuccAGCgucagGCGc -3'
miRNA:   3'- -UCGU-GCCGCCGC-GCa--ACuu-UCGa----UGC- -5'
30727 3' -55.1 NC_006552.1 + 11964 0.68 0.665202
Target:  5'- cGCAUGGCGGUGUGcugggGAAGGUg--- -3'
miRNA:   3'- uCGUGCCGCCGCGCaa---CUUUCGaugc -5'
30727 3' -55.1 NC_006552.1 + 32351 0.68 0.643376
Target:  5'- cGCACGGCGGCuucgcgcacugcGuCGUUGAGccagucGGCcACGu -3'
miRNA:   3'- uCGUGCCGCCG------------C-GCAACUU------UCGaUGC- -5'
30727 3' -55.1 NC_006552.1 + 12960 0.69 0.567161
Target:  5'- uGGCcUGGCGGUGCGUUcGAGGCcaGCa -3'
miRNA:   3'- -UCGuGCCGCCGCGCAAcUUUCGa-UGc -5'
30727 3' -55.1 NC_006552.1 + 1921 0.69 0.567161
Target:  5'- uGCucgACGGCGGCGuCGUUGucggGAGUguggACGa -3'
miRNA:   3'- uCG---UGCCGCCGC-GCAACu---UUCGa---UGC- -5'
30727 3' -55.1 NC_006552.1 + 13286 0.7 0.524562
Target:  5'- cGCugGGCuGCGCGg-GAucGGGCUugGg -3'
miRNA:   3'- uCGugCCGcCGCGCaaCU--UUCGAugC- -5'
30727 3' -55.1 NC_006552.1 + 28023 0.71 0.453298
Target:  5'- gAGUACGGCGGCGCGccGGu--CUugGu -3'
miRNA:   3'- -UCGUGCCGCCGCGCaaCUuucGAugC- -5'
30727 3' -55.1 NC_006552.1 + 17599 0.71 0.453298
Target:  5'- cGCugGGCGGCGCG-----GGUUugGa -3'
miRNA:   3'- uCGugCCGCCGCGCaacuuUCGAugC- -5'
30727 3' -55.1 NC_006552.1 + 8236 0.72 0.433909
Target:  5'- cAGCAUGuCGGCGCGggccaUGGuguccAGGCUACGg -3'
miRNA:   3'- -UCGUGCcGCCGCGCa----ACU-----UUCGAUGC- -5'
30727 3' -55.1 NC_006552.1 + 33750 0.73 0.369185
Target:  5'- cAGCGCGGCGGCGgcauugcUGUUGAGcagaacgccGGCcGCGu -3'
miRNA:   3'- -UCGUGCCGCCGC-------GCAACUU---------UCGaUGC- -5'
30727 3' -55.1 NC_006552.1 + 56616 0.74 0.305329
Target:  5'- gAGCcuuuCGGCGGCGCGgcuucUGuccuGCUGCGg -3'
miRNA:   3'- -UCGu---GCCGCCGCGCa----ACuuu-CGAUGC- -5'
30727 3' -55.1 NC_006552.1 + 25217 0.77 0.208055
Target:  5'- cAGCAgcGCGGCGcCGUUGAcguuGAGCUGCGa -3'
miRNA:   3'- -UCGUgcCGCCGC-GCAACU----UUCGAUGC- -5'
30727 3' -55.1 NC_006552.1 + 50113 1.1 0.001107
Target:  5'- cAGCACGGCGGCGCGUUGAAAGCUACGg -3'
miRNA:   3'- -UCGUGCCGCCGCGCAACUUUCGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.