miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 8138 0.67 0.65754
Target:  5'- uGCGCCAggUggUCGCGCAGUaucgCGGCc -3'
miRNA:   3'- uCGCGGU--GuuGGCGCGUCGcaa-GUUG- -5'
30729 3' -55.8 NC_006552.1 + 4830 0.67 0.65754
Target:  5'- cGCGCacaggGCggUCGCGCAGCucacCAGCa -3'
miRNA:   3'- uCGCGg----UGuuGGCGCGUCGcaa-GUUG- -5'
30729 3' -55.8 NC_006552.1 + 8674 0.67 0.610419
Target:  5'- cGGCGCCAgauCAGCCGCaucGCuGGCGUaauaacucacgucaUCGAUa -3'
miRNA:   3'- -UCGCGGU---GUUGGCG---CG-UCGCA--------------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 20818 0.67 0.624663
Target:  5'- cGCGUC-CGGCgGCGUGGCGUcgAACg -3'
miRNA:   3'- uCGCGGuGUUGgCGCGUCGCAagUUG- -5'
30729 3' -55.8 NC_006552.1 + 4497 0.67 0.624663
Target:  5'- aGGCGCaccgaGCGGCUGC-CAGCcaUCGGCg -3'
miRNA:   3'- -UCGCGg----UGUUGGCGcGUCGcaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 21976 0.67 0.624663
Target:  5'- cAGCaGUaCGCGACCGUGCAGCGcccCAGu -3'
miRNA:   3'- -UCG-CG-GUGUUGGCGCGUCGCaa-GUUg -5'
30729 3' -55.8 NC_006552.1 + 46422 0.67 0.635628
Target:  5'- uGGCGCCACcACCcagaGUGCGGCaagUCAu- -3'
miRNA:   3'- -UCGCGGUGuUGG----CGCGUCGca-AGUug -5'
30729 3' -55.8 NC_006552.1 + 5102 0.67 0.635628
Target:  5'- cGGCGCC-CAACuCGCG-GGCGgUCAuuGCg -3'
miRNA:   3'- -UCGCGGuGUUG-GCGCgUCGCaAGU--UG- -5'
30729 3' -55.8 NC_006552.1 + 26444 0.67 0.635628
Target:  5'- cGGCGCCGacuccugggGGCCGCGCAGCc------ -3'
miRNA:   3'- -UCGCGGUg--------UUGGCGCGUCGcaaguug -5'
30729 3' -55.8 NC_006552.1 + 64154 0.67 0.635628
Target:  5'- cGCGCCGCccuggcGCaCGCGCcGaccaGUUCGGCa -3'
miRNA:   3'- uCGCGGUGu-----UG-GCGCGuCg---CAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 12304 0.67 0.646591
Target:  5'- gAGgGCCugAGCCaugguGCGUAGuCGcUCGGCg -3'
miRNA:   3'- -UCgCGGugUUGG-----CGCGUC-GCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 56861 0.66 0.700998
Target:  5'- cAGCGCCGCGGCga-GCGGCGaacgCAGg -3'
miRNA:   3'- -UCGCGGUGUUGgcgCGUCGCaa--GUUg -5'
30729 3' -55.8 NC_006552.1 + 36112 0.66 0.700998
Target:  5'- cGCGCC-CuGCUGCGCgccAGUGUUCu-- -3'
miRNA:   3'- uCGCGGuGuUGGCGCG---UCGCAAGuug -5'
30729 3' -55.8 NC_006552.1 + 30578 0.66 0.700998
Target:  5'- cAGCGCCGgGAUUGguaGCAGCGUcgCAc- -3'
miRNA:   3'- -UCGCGGUgUUGGCg--CGUCGCAa-GUug -5'
30729 3' -55.8 NC_006552.1 + 8222 0.66 0.700998
Target:  5'- -uCGCCGCcGaaGCGCAGCaugUCGGCg -3'
miRNA:   3'- ucGCGGUGuUggCGCGUCGca-AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 44369 0.66 0.700998
Target:  5'- cAGUGCCAgCAGCCGguCGgAGgGUccagUCAGCa -3'
miRNA:   3'- -UCGCGGU-GUUGGC--GCgUCgCA----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 16020 0.66 0.699921
Target:  5'- uGCGCCACuguccacGGCCuGCGCAGCa------ -3'
miRNA:   3'- uCGCGGUG-------UUGG-CGCGUCGcaaguug -5'
30729 3' -55.8 NC_006552.1 + 26866 0.66 0.679358
Target:  5'- cGcCGCCGCGuuGCaGCGCGGCaucUUCGGCg -3'
miRNA:   3'- uC-GCGGUGU--UGgCGCGUCGc--AAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 21168 0.66 0.679358
Target:  5'- aGGCGCaucCGGCCGCGuCGGUGc-CGGCa -3'
miRNA:   3'- -UCGCGgu-GUUGGCGC-GUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26154 0.66 0.722371
Target:  5'- aAGCGCagCACGuuGgCGCGC-GCGaUCAGCa -3'
miRNA:   3'- -UCGCG--GUGU--UgGCGCGuCGCaAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.