miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 50513 0.73 0.299288
Target:  5'- cGGCGCCgGCAGCCGUcaAGCGagCAACa -3'
miRNA:   3'- -UCGCGG-UGUUGGCGcgUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26473 0.74 0.291931
Target:  5'- -aCGCCACAGCCGCGCcguaGGUGccuugacUCAACg -3'
miRNA:   3'- ucGCGGUGUUGGCGCG----UCGCa------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 33536 0.74 0.277642
Target:  5'- uGGUG-CGCAGgCGCGCAGCGgcCGACa -3'
miRNA:   3'- -UCGCgGUGUUgGCGCGUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 53299 0.74 0.257262
Target:  5'- --gGCCGCGcagcccGCCGCGCGGCGcaCAACa -3'
miRNA:   3'- ucgCGGUGU------UGGCGCGUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 49003 0.75 0.226035
Target:  5'- gGGCaaGCC-CGGCgGCGCgAGCGUUCAGCc -3'
miRNA:   3'- -UCG--CGGuGUUGgCGCG-UCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 63556 0.7 0.455681
Target:  5'- uGCGCCACccGCCuGCGCGGCaucgUCGAa -3'
miRNA:   3'- uCGCGGUGu-UGG-CGCGUCGca--AGUUg -5'
30729 3' -55.8 NC_006552.1 + 26716 0.7 0.455681
Target:  5'- gGGCGCCgaagGCGucGCCGUGCAGUGggCuuuGCc -3'
miRNA:   3'- -UCGCGG----UGU--UGGCGCGUCGCaaGu--UG- -5'
30729 3' -55.8 NC_006552.1 + 6757 0.68 0.591842
Target:  5'- uGCGCCGC-ACCGuCGaucaggucuuCGGCGUcuUCGGCg -3'
miRNA:   3'- uCGCGGUGuUGGC-GC----------GUCGCA--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 13930 0.68 0.591842
Target:  5'- cGUGCCACGACaGCGCccGCGUcgcgggccacgUCGAUg -3'
miRNA:   3'- uCGCGGUGUUGgCGCGu-CGCA-----------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 20293 0.68 0.570116
Target:  5'- uGCGCCAgCGucucgaagGCCGCGUucugcGCGUUgAACa -3'
miRNA:   3'- uCGCGGU-GU--------UGGCGCGu----CGCAAgUUG- -5'
30729 3' -55.8 NC_006552.1 + 62607 0.68 0.566873
Target:  5'- gAGCGCgGCAcguggguugagucuGcCCGCaugcCAGCGUUCGACc -3'
miRNA:   3'- -UCGCGgUGU--------------U-GGCGc---GUCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 33728 0.68 0.563634
Target:  5'- -aCGCCACGACaucgccaaccgccaGCGCGGCGg-CGGCa -3'
miRNA:   3'- ucGCGGUGUUGg-------------CGCGUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26512 0.68 0.548589
Target:  5'- cGGCGCCugccaccagcaGCGGCgGCGCcggGGUGUcCAGCg -3'
miRNA:   3'- -UCGCGG-----------UGUUGgCGCG---UCGCAaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 41418 0.68 0.548589
Target:  5'- cGCGCCAguuCGGCCGCGUccguggggAGCGgcaUCAGu -3'
miRNA:   3'- uCGCGGU---GUUGGCGCG--------UCGCa--AGUUg -5'
30729 3' -55.8 NC_006552.1 + 8418 0.69 0.537921
Target:  5'- cGGgGCUcaGGCCGCGCcaGGCGcgCAGCa -3'
miRNA:   3'- -UCgCGGugUUGGCGCG--UCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 62758 0.69 0.527324
Target:  5'- gGGCGCU---GCCGCGCcuGCGagCGACg -3'
miRNA:   3'- -UCGCGGuguUGGCGCGu-CGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 4638 0.69 0.527324
Target:  5'- gGGCGCgACAcgaauuguagGCCGCGCucAGgGUcUCGACu -3'
miRNA:   3'- -UCGCGgUGU----------UGGCGCG--UCgCA-AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 12196 0.7 0.485787
Target:  5'- cAGUGCCuugucgGACCGCGCAGaGgccUCAGCg -3'
miRNA:   3'- -UCGCGGug----UUGGCGCGUCgCa--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 61217 0.7 0.485787
Target:  5'- gGGCGaCACAGCCaagGgGGCGUUCGGCu -3'
miRNA:   3'- -UCGCgGUGUUGGcg-CgUCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 10680 0.7 0.465606
Target:  5'- aAGCGCCACuugccaucaguGCCGCGguGCcagccgGUaucUCGACg -3'
miRNA:   3'- -UCGCGGUGu----------UGGCGCguCG------CA---AGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.