miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 49579 1.09 0.000889
Target:  5'- gAGCGCCACAACCGCGCAGCGUUCAACu -3'
miRNA:   3'- -UCGCGGUGUUGGCGCGUCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 49003 0.75 0.226035
Target:  5'- gGGCaaGCC-CGGCgGCGCgAGCGUUCAGCc -3'
miRNA:   3'- -UCG--CGGuGUUGgCGCG-UCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 53299 0.74 0.257262
Target:  5'- --gGCCGCGcagcccGCCGCGCGGCGcaCAACa -3'
miRNA:   3'- ucgCGGUGU------UGGCGCGUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 33536 0.74 0.277642
Target:  5'- uGGUG-CGCAGgCGCGCAGCGgcCGACa -3'
miRNA:   3'- -UCGCgGUGUUgGCGCGUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26473 0.74 0.291931
Target:  5'- -aCGCCACAGCCGCGCcguaGGUGccuugacUCAACg -3'
miRNA:   3'- ucGCGGUGUUGGCGCG----UCGCa------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 55339 0.73 0.299288
Target:  5'- aGGCGaCCGCGACUuCGUGGgGUUCAGCc -3'
miRNA:   3'- -UCGC-GGUGUUGGcGCGUCgCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 50513 0.73 0.299288
Target:  5'- cGGCGCCgGCAGCCGUcaAGCGagCAACa -3'
miRNA:   3'- -UCGCGG-UGUUGGCGcgUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 61979 0.73 0.312892
Target:  5'- uGCGCCGCugugcagcagcgaGGCCgaacucuGCGCGGCGUUCAu- -3'
miRNA:   3'- uCGCGGUG-------------UUGG-------CGCGUCGCAAGUug -5'
30729 3' -55.8 NC_006552.1 + 35430 0.72 0.354792
Target:  5'- uGgGCCGCAGCCuucGCGUcuugcGCGUUCGGCu -3'
miRNA:   3'- uCgCGGUGUUGG---CGCGu----CGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 50082 0.72 0.354792
Target:  5'- gAGCGCgACAACCGCacGCGgGCGgaacgcgCAGCa -3'
miRNA:   3'- -UCGCGgUGUUGGCG--CGU-CGCaa-----GUUG- -5'
30729 3' -55.8 NC_006552.1 + 5618 0.72 0.379821
Target:  5'- cAGCGCgGCAACCagcaCGCGGUuacggcuGUUCGACa -3'
miRNA:   3'- -UCGCGgUGUUGGc---GCGUCG-------CAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 11459 0.71 0.389619
Target:  5'- cAGCGCUACGAacUCGCGCAGUGcagAGCg -3'
miRNA:   3'- -UCGCGGUGUU--GGCGCGUCGCaagUUG- -5'
30729 3' -55.8 NC_006552.1 + 2644 0.71 0.398669
Target:  5'- uGGCgGCCcuucugggcuaGgGACCGCGCGGCGccgaUCAACg -3'
miRNA:   3'- -UCG-CGG-----------UgUUGGCGCGUCGCa---AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 5436 0.7 0.455681
Target:  5'- cGCGCCAguuguucGCCGCGCuGGCGggugaUCGGCg -3'
miRNA:   3'- uCGCGGUgu-----UGGCGCG-UCGCa----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 63556 0.7 0.455681
Target:  5'- uGCGCCACccGCCuGCGCGGCaucgUCGAa -3'
miRNA:   3'- uCGCGGUGu-UGG-CGCGUCGca--AGUUg -5'
30729 3' -55.8 NC_006552.1 + 26716 0.7 0.455681
Target:  5'- gGGCGCCgaagGCGucGCCGUGCAGUGggCuuuGCc -3'
miRNA:   3'- -UCGCGG----UGU--UGGCGCGUCGCaaGu--UG- -5'
30729 3' -55.8 NC_006552.1 + 10680 0.7 0.465606
Target:  5'- aAGCGCCACuugccaucaguGCCGCGguGCcagccgGUaucUCGACg -3'
miRNA:   3'- -UCGCGGUGu----------UGGCGCguCG------CA---AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 61217 0.7 0.485787
Target:  5'- gGGCGaCACAGCCaagGgGGCGUUCGGCu -3'
miRNA:   3'- -UCGCgGUGUUGGcg-CgUCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 12196 0.7 0.485787
Target:  5'- cAGUGCCuugucgGACCGCGCAGaGgccUCAGCg -3'
miRNA:   3'- -UCGCGGug----UUGGCGCGUCgCa--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 62758 0.69 0.527324
Target:  5'- gGGCGCU---GCCGCGCcuGCGagCGACg -3'
miRNA:   3'- -UCGCGGuguUGGCGCGu-CGCaaGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.