miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 2052 0.67 0.65754
Target:  5'- aGGCGCUugAGCgCGC-CGGCGUcgugcgCGGCc -3'
miRNA:   3'- -UCGCGGugUUG-GCGcGUCGCAa-----GUUG- -5'
30729 3' -55.8 NC_006552.1 + 2644 0.71 0.398669
Target:  5'- uGGCgGCCcuucugggcuaGgGACCGCGCGGCGccgaUCAACg -3'
miRNA:   3'- -UCG-CGG-----------UgUUGGCGCGUCGCa---AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 4497 0.67 0.624663
Target:  5'- aGGCGCaccgaGCGGCUGC-CAGCcaUCGGCg -3'
miRNA:   3'- -UCGCGg----UGUUGGCGcGUCGcaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 4638 0.69 0.527324
Target:  5'- gGGCGCgACAcgaauuguagGCCGCGCucAGgGUcUCGACu -3'
miRNA:   3'- -UCGCGgUGU----------UGGCGCG--UCgCA-AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 4830 0.67 0.65754
Target:  5'- cGCGCacaggGCggUCGCGCAGCucacCAGCa -3'
miRNA:   3'- uCGCGg----UGuuGGCGCGUCGcaa-GUUG- -5'
30729 3' -55.8 NC_006552.1 + 5102 0.67 0.635628
Target:  5'- cGGCGCC-CAACuCGCG-GGCGgUCAuuGCg -3'
miRNA:   3'- -UCGCGGuGUUG-GCGCgUCGCaAGU--UG- -5'
30729 3' -55.8 NC_006552.1 + 5436 0.7 0.455681
Target:  5'- cGCGCCAguuguucGCCGCGCuGGCGggugaUCGGCg -3'
miRNA:   3'- uCGCGGUgu-----UGGCGCG-UCGCa----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 5618 0.72 0.379821
Target:  5'- cAGCGCgGCAACCagcaCGCGGUuacggcuGUUCGACa -3'
miRNA:   3'- -UCGCGgUGUUGGc---GCGUCG-------CAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 6149 0.67 0.665191
Target:  5'- uGCGCCGauucCAaucggcuauugcuuGCCGCGC-GCGcUCAACc -3'
miRNA:   3'- uCGCGGU----GU--------------UGGCGCGuCGCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 6757 0.68 0.591842
Target:  5'- uGCGCCGC-ACCGuCGaucaggucuuCGGCGUcuUCGGCg -3'
miRNA:   3'- uCGCGGUGuUGGC-GC----------GUCGCA--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 8138 0.67 0.65754
Target:  5'- uGCGCCAggUggUCGCGCAGUaucgCGGCc -3'
miRNA:   3'- uCGCGGU--GuuGGCGCGUCGcaa-GUUG- -5'
30729 3' -55.8 NC_006552.1 + 8222 0.66 0.700998
Target:  5'- -uCGCCGCcGaaGCGCAGCaugUCGGCg -3'
miRNA:   3'- ucGCGGUGuUggCGCGUCGca-AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 8418 0.69 0.537921
Target:  5'- cGGgGCUcaGGCCGCGCcaGGCGcgCAGCa -3'
miRNA:   3'- -UCgCGGugUUGGCGCG--UCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 8674 0.67 0.610419
Target:  5'- cGGCGCCAgauCAGCCGCaucGCuGGCGUaauaacucacgucaUCGAUa -3'
miRNA:   3'- -UCGCGGU---GUUGGCG---CG-UCGCA--------------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 10680 0.7 0.465606
Target:  5'- aAGCGCCACuugccaucaguGCCGCGguGCcagccgGUaucUCGACg -3'
miRNA:   3'- -UCGCGGUGu----------UGGCGCguCG------CA---AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 10750 0.66 0.679358
Target:  5'- uGGCGaugCGCuGCUGCGCGGUGcUCAGg -3'
miRNA:   3'- -UCGCg--GUGuUGGCGCGUCGCaAGUUg -5'
30729 3' -55.8 NC_006552.1 + 11459 0.71 0.389619
Target:  5'- cAGCGCUACGAacUCGCGCAGUGcagAGCg -3'
miRNA:   3'- -UCGCGGUGUU--GGCGCGUCGCaagUUG- -5'
30729 3' -55.8 NC_006552.1 + 12196 0.7 0.485787
Target:  5'- cAGUGCCuugucgGACCGCGCAGaGgccUCAGCg -3'
miRNA:   3'- -UCGCGGug----UUGGCGCGUCgCa--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 12304 0.67 0.646591
Target:  5'- gAGgGCCugAGCCaugguGCGUAGuCGcUCGGCg -3'
miRNA:   3'- -UCgCGGugUUGG-----CGCGUC-GCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 12946 0.68 0.591842
Target:  5'- cAGCGCgCugGccuugGCCugGCGguGCGUUCGAg -3'
miRNA:   3'- -UCGCG-GugU-----UGG--CGCguCGCAAGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.