miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 35284 0.67 0.65754
Target:  5'- cGGgGCUcauGCCGCGCagGGCGUcCGACa -3'
miRNA:   3'- -UCgCGGuguUGGCGCG--UCGCAaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 32524 0.67 0.65754
Target:  5'- cGCGCCA-AGCCGUGCuGCuugaccagGUUCAGg -3'
miRNA:   3'- uCGCGGUgUUGGCGCGuCG--------CAAGUUg -5'
30729 3' -55.8 NC_006552.1 + 4830 0.67 0.65754
Target:  5'- cGCGCacaggGCggUCGCGCAGCucacCAGCa -3'
miRNA:   3'- uCGCGg----UGuuGGCGCGUCGcaa-GUUG- -5'
30729 3' -55.8 NC_006552.1 + 12304 0.67 0.646591
Target:  5'- gAGgGCCugAGCCaugguGCGUAGuCGcUCGGCg -3'
miRNA:   3'- -UCgCGGugUUGG-----CGCGUC-GCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 46422 0.67 0.635628
Target:  5'- uGGCGCCACcACCcagaGUGCGGCaagUCAu- -3'
miRNA:   3'- -UCGCGGUGuUGG----CGCGUCGca-AGUug -5'
30729 3' -55.8 NC_006552.1 + 5102 0.67 0.635628
Target:  5'- cGGCGCC-CAACuCGCG-GGCGgUCAuuGCg -3'
miRNA:   3'- -UCGCGGuGUUG-GCGCgUCGCaAGU--UG- -5'
30729 3' -55.8 NC_006552.1 + 26444 0.67 0.635628
Target:  5'- cGGCGCCGacuccugggGGCCGCGCAGCc------ -3'
miRNA:   3'- -UCGCGGUg--------UUGGCGCGUCGcaaguug -5'
30729 3' -55.8 NC_006552.1 + 64154 0.67 0.635628
Target:  5'- cGCGCCGCccuggcGCaCGCGCcGaccaGUUCGGCa -3'
miRNA:   3'- uCGCGGUGu-----UG-GCGCGuCg---CAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 21976 0.67 0.624663
Target:  5'- cAGCaGUaCGCGACCGUGCAGCGcccCAGu -3'
miRNA:   3'- -UCG-CG-GUGUUGGCGCGUCGCaa-GUUg -5'
30729 3' -55.8 NC_006552.1 + 4497 0.67 0.624663
Target:  5'- aGGCGCaccgaGCGGCUGC-CAGCcaUCGGCg -3'
miRNA:   3'- -UCGCGg----UGUUGGCGcGUCGcaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 20818 0.67 0.624663
Target:  5'- cGCGUC-CGGCgGCGUGGCGUcgAACg -3'
miRNA:   3'- uCGCGGuGUUGgCGCGUCGCAagUUG- -5'
30729 3' -55.8 NC_006552.1 + 8674 0.67 0.610419
Target:  5'- cGGCGCCAgauCAGCCGCaucGCuGGCGUaauaacucacgucaUCGAUa -3'
miRNA:   3'- -UCGCGGU---GUUGGCG---CG-UCGCA--------------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 15019 0.68 0.601667
Target:  5'- cGGCGCCAguggcuuCAGCaCGCGgGGCuGcgCAGCa -3'
miRNA:   3'- -UCGCGGU-------GUUG-GCGCgUCG-CaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 6757 0.68 0.591842
Target:  5'- uGCGCCGC-ACCGuCGaucaggucuuCGGCGUcuUCGGCg -3'
miRNA:   3'- uCGCGGUGuUGGC-GC----------GUCGCA--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 13930 0.68 0.591842
Target:  5'- cGUGCCACGACaGCGCccGCGUcgcgggccacgUCGAUg -3'
miRNA:   3'- uCGCGGUGUUGgCGCGu-CGCA-----------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 12946 0.68 0.591842
Target:  5'- cAGCGCgCugGccuugGCCugGCGguGCGUUCGAg -3'
miRNA:   3'- -UCGCG-GugU-----UGG--CGCguCGCAAGUUg -5'
30729 3' -55.8 NC_006552.1 + 20293 0.68 0.570116
Target:  5'- uGCGCCAgCGucucgaagGCCGCGUucugcGCGUUgAACa -3'
miRNA:   3'- uCGCGGU-GU--------UGGCGCGu----CGCAAgUUG- -5'
30729 3' -55.8 NC_006552.1 + 62607 0.68 0.566873
Target:  5'- gAGCGCgGCAcguggguugagucuGcCCGCaugcCAGCGUUCGACc -3'
miRNA:   3'- -UCGCGgUGU--------------U-GGCGc---GUCGCAAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 33728 0.68 0.563634
Target:  5'- -aCGCCACGACaucgccaaccgccaGCGCGGCGg-CGGCa -3'
miRNA:   3'- ucGCGGUGUUGg-------------CGCGUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26512 0.68 0.548589
Target:  5'- cGGCGCCugccaccagcaGCGGCgGCGCcggGGUGUcCAGCg -3'
miRNA:   3'- -UCGCGG-----------UGUUGgCGCG---UCGCAaGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.