miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30730 3' -58.3 NC_006552.1 + 39100 0.66 0.622831
Target:  5'- -cAGUGGuccuccUGCACGguCCaGGCCCg -3'
miRNA:   3'- ucUCACCuua---GCGUGCguGGgCCGGG- -5'
30730 3' -58.3 NC_006552.1 + 43829 0.66 0.605843
Target:  5'- cGAGUgcgcauccauccccuGGAacccauccacAUUGCGCGCGacuaaCUGGCCCa -3'
miRNA:   3'- uCUCA---------------CCU----------UAGCGUGCGUg----GGCCGGG- -5'
30730 3' -58.3 NC_006552.1 + 12529 0.66 0.591022
Target:  5'- cAGGGUGucGuaguccUCGCggcugACGCGCUCGGCCa -3'
miRNA:   3'- -UCUCACcuU------AGCG-----UGCGUGGGCCGGg -5'
30730 3' -58.3 NC_006552.1 + 38572 0.66 0.584688
Target:  5'- cAGGGUGuAGUCGCgcuucacaucgaagcGCGCACCaGGCUUc -3'
miRNA:   3'- -UCUCACcUUAGCG---------------UGCGUGGgCCGGG- -5'
30730 3' -58.3 NC_006552.1 + 61494 0.66 0.580472
Target:  5'- -cGGUcGAcuaCGUGCGCGCCCGGgCCg -3'
miRNA:   3'- ucUCAcCUua-GCGUGCGUGGGCCgGG- -5'
30730 3' -58.3 NC_006552.1 + 23277 0.68 0.508135
Target:  5'- cGGAGUGGAGUaagcCGgGUugCCGuaGCCCa -3'
miRNA:   3'- -UCUCACCUUAgc--GUgCGugGGC--CGGG- -5'
30730 3' -58.3 NC_006552.1 + 26540 0.68 0.488142
Target:  5'- cGGGGUGuccagCGuCAgGCGCUCGGCCUg -3'
miRNA:   3'- -UCUCACcuua-GC-GUgCGUGGGCCGGG- -5'
30730 3' -58.3 NC_006552.1 + 34998 0.68 0.467555
Target:  5'- -aAGUGGAAaCGCACcucguCGCCCuuguugcGGCCCa -3'
miRNA:   3'- ucUCACCUUaGCGUGc----GUGGG-------CCGGG- -5'
30730 3' -58.3 NC_006552.1 + 8144 0.69 0.439883
Target:  5'- -aGGUGG--UCGCGCaGUAUCgCGGCCCc -3'
miRNA:   3'- ucUCACCuuAGCGUG-CGUGG-GCCGGG- -5'
30730 3' -58.3 NC_006552.1 + 17660 0.7 0.367864
Target:  5'- cGAGUucguuggcggcgaGGAA--GCGCGCGCCCuGCCCc -3'
miRNA:   3'- uCUCA-------------CCUUagCGUGCGUGGGcCGGG- -5'
30730 3' -58.3 NC_006552.1 + 33201 0.71 0.336196
Target:  5'- -aGGUGGAGUUGCACGC---CGGCCa -3'
miRNA:   3'- ucUCACCUUAGCGUGCGuggGCCGGg -5'
30730 3' -58.3 NC_006552.1 + 14102 0.73 0.239232
Target:  5'- ----cGGGccgcgcuucauGUCGCGCGCAUCCGGCgCCg -3'
miRNA:   3'- ucucaCCU-----------UAGCGUGCGUGGGCCG-GG- -5'
30730 3' -58.3 NC_006552.1 + 48738 1.12 0.00041
Target:  5'- aAGAGUGGAAUCGCACGCACCCGGCCCa -3'
miRNA:   3'- -UCUCACCUUAGCGUGCGUGGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.