miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30731 3' -65.6 NC_006552.1 + 48499 1.12 0.000085
Target:  5'- uGCGAGCCGGCCUGAGCCCGCGCGCCCa -3'
miRNA:   3'- -CGCUCGGCCGGACUCGGGCGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 64124 0.72 0.103836
Target:  5'- cGCaAGCUGuGCCUGAuucgcaacgcaGCUCGCGCcGCCCu -3'
miRNA:   3'- -CGcUCGGC-CGGACU-----------CGGGCGCG-CGGG- -5'
30731 3' -65.6 NC_006552.1 + 32645 0.72 0.112258
Target:  5'- uGCGAGCgCgcuccugcugGGCCUgcuGAGCCUGCGCGaucaCCu -3'
miRNA:   3'- -CGCUCG-G----------CCGGA---CUCGGGCGCGCg---GG- -5'
30731 3' -65.6 NC_006552.1 + 14087 0.71 0.121314
Target:  5'- uGCGAuacgGCCGGCC-GGGCCgcgcuucauguCGCGCGCauCCg -3'
miRNA:   3'- -CGCU----CGGCCGGaCUCGG-----------GCGCGCG--GG- -5'
30731 3' -65.6 NC_006552.1 + 15336 0.71 0.131047
Target:  5'- cGCGAcGCaCGGCCUGcAGCgCCGCagGCuGCUCg -3'
miRNA:   3'- -CGCU-CG-GCCGGAC-UCG-GGCG--CG-CGGG- -5'
30731 3' -65.6 NC_006552.1 + 8535 0.7 0.156612
Target:  5'- cGCGcaCCGGCUUGcuGUCCacgucGCGCGCCCa -3'
miRNA:   3'- -CGCucGGCCGGACu-CGGG-----CGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 12947 0.7 0.160613
Target:  5'- aGCGcGCUGGCCUuGGCCUggcgGUGCGUUCg -3'
miRNA:   3'- -CGCuCGGCCGGAcUCGGG----CGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 7221 0.7 0.160613
Target:  5'- aGCGAGCCGcuGCCgcGGGCCUGCGCcaUCa -3'
miRNA:   3'- -CGCUCGGC--CGGa-CUCGGGCGCGcgGG- -5'
30731 3' -65.6 NC_006552.1 + 9734 0.7 0.161831
Target:  5'- cGCGAuucaucagcauggcGCCGGCCUGcugaucaaucuucGCCCGCuGCuGUCCg -3'
miRNA:   3'- -CGCU--------------CGGCCGGACu------------CGGGCG-CG-CGGG- -5'
30731 3' -65.6 NC_006552.1 + 32702 0.69 0.168893
Target:  5'- cGCcGGCCGGCgCgGGGCCgGUggaGCGCUCg -3'
miRNA:   3'- -CGcUCGGCCG-GaCUCGGgCG---CGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 45863 0.69 0.196062
Target:  5'- uGCGGGC--GUCUGAaCCagGCGCGCCCa -3'
miRNA:   3'- -CGCUCGgcCGGACUcGGg-CGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 57475 0.68 0.198979
Target:  5'- gGUGGcGCCGGUacgggcuuggaaaUGGGCCUGgGCcGCCCg -3'
miRNA:   3'- -CGCU-CGGCCGg------------ACUCGGGCgCG-CGGG- -5'
30731 3' -65.6 NC_006552.1 + 21918 0.68 0.205934
Target:  5'- aGCGccuGCaCGGCCUGA---UGCGCGUCCa -3'
miRNA:   3'- -CGCu--CG-GCCGGACUcggGCGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 52104 0.68 0.20949
Target:  5'- aGCcAGCCagcaaGGCagcaGAGCCCagcgcuacccagugGCGCGCCCg -3'
miRNA:   3'- -CGcUCGG-----CCGga--CUCGGG--------------CGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 37826 0.68 0.21258
Target:  5'- cGCGAucugggcGCCGGCCUGcauggcacugaaugcGGCCUGCaC-CCCg -3'
miRNA:   3'- -CGCU-------CGGCCGGAC---------------UCGGGCGcGcGGG- -5'
30731 3' -65.6 NC_006552.1 + 20533 0.68 0.221547
Target:  5'- --cAGCCGGCCUu-GCUCGCGCaCCa -3'
miRNA:   3'- cgcUCGGCCGGAcuCGGGCGCGcGGg -5'
30731 3' -65.6 NC_006552.1 + 27595 0.68 0.225333
Target:  5'- aGCGGGaaaGGCUUGAggauGCCCagguaggugcugauGCGCGCCg -3'
miRNA:   3'- -CGCUCgg-CCGGACU----CGGG--------------CGCGCGGg -5'
30731 3' -65.6 NC_006552.1 + 18747 0.67 0.238158
Target:  5'- aGUGGuCCGGCCUGugcaauGGCCUGUugcugccgugccGCGUCCg -3'
miRNA:   3'- -CGCUcGGCCGGAC------UCGGGCG------------CGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 60420 0.67 0.238158
Target:  5'- ---cGCCGGCacucGCCCGCGCacuggaccagGCCCg -3'
miRNA:   3'- cgcuCGGCCGgacuCGGGCGCG----------CGGG- -5'
30731 3' -65.6 NC_006552.1 + 17962 0.67 0.243922
Target:  5'- cCGAGuuaCCGGCguuguaCUGAGCCaaCGCGUCCg -3'
miRNA:   3'- cGCUC---GGCCG------GACUCGGgcGCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.