miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30731 3' -65.6 NC_006552.1 + 27595 0.68 0.225333
Target:  5'- aGCGGGaaaGGCUUGAggauGCCCagguaggugcugauGCGCGCCg -3'
miRNA:   3'- -CGCUCgg-CCGGACU----CGGG--------------CGCGCGGg -5'
30731 3' -65.6 NC_006552.1 + 32315 0.66 0.286891
Target:  5'- aCGGcGUCGGCCUGgcucucguggaucAGCCUGCcGCGCa- -3'
miRNA:   3'- cGCU-CGGCCGGAC-------------UCGGGCG-CGCGgg -5'
30731 3' -65.6 NC_006552.1 + 32645 0.72 0.112258
Target:  5'- uGCGAGCgCgcuccugcugGGCCUgcuGAGCCUGCGCGaucaCCu -3'
miRNA:   3'- -CGCUCG-G----------CCGGA---CUCGGGCGCGCg---GG- -5'
30731 3' -65.6 NC_006552.1 + 32702 0.69 0.168893
Target:  5'- cGCcGGCCGGCgCgGGGCCgGUggaGCGCUCg -3'
miRNA:   3'- -CGcUCGGCCG-GaCUCGGgCG---CGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 37826 0.68 0.21258
Target:  5'- cGCGAucugggcGCCGGCCUGcauggcacugaaugcGGCCUGCaC-CCCg -3'
miRNA:   3'- -CGCU-------CGGCCGGAC---------------UCGGGCGcGcGGG- -5'
30731 3' -65.6 NC_006552.1 + 44588 0.67 0.249208
Target:  5'- aGUGAGCaggcgcucguaggCGGCaaUGAacGCCaugCGCGCGCCCa -3'
miRNA:   3'- -CGCUCG-------------GCCGg-ACU--CGG---GCGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 45863 0.69 0.196062
Target:  5'- uGCGGGC--GUCUGAaCCagGCGCGCCCa -3'
miRNA:   3'- -CGCUCGgcCGGACUcGGg-CGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 48499 1.12 0.000085
Target:  5'- uGCGAGCCGGCCUGAGCCCGCGCGCCCa -3'
miRNA:   3'- -CGCUCGGCCGGACUCGGGCGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 52104 0.68 0.20949
Target:  5'- aGCcAGCCagcaaGGCagcaGAGCCCagcgcuacccagugGCGCGCCCg -3'
miRNA:   3'- -CGcUCGG-----CCGga--CUCGGG--------------CGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 52303 0.66 0.315136
Target:  5'- cGCGAaagCGGCCUGAcuaGCCaccuCGCGCCg -3'
miRNA:   3'- -CGCUcg-GCCGGACU---CGGgc--GCGCGGg -5'
30731 3' -65.6 NC_006552.1 + 53289 0.66 0.294268
Target:  5'- uGCGAucaaCGGCCgcgcAGCCCGCcGCGCg- -3'
miRNA:   3'- -CGCUcg--GCCGGac--UCGGGCG-CGCGgg -5'
30731 3' -65.6 NC_006552.1 + 57475 0.68 0.198979
Target:  5'- gGUGGcGCCGGUacgggcuuggaaaUGGGCCUGgGCcGCCCg -3'
miRNA:   3'- -CGCU-CGGCCGg------------ACUCGGGCgCG-CGGG- -5'
30731 3' -65.6 NC_006552.1 + 60420 0.67 0.238158
Target:  5'- ---cGCCGGCacucGCCCGCGCacuggaccagGCCCg -3'
miRNA:   3'- cgcuCGGCCGgacuCGGGCGCG----------CGGG- -5'
30731 3' -65.6 NC_006552.1 + 60797 0.66 0.287556
Target:  5'- uUGAuGCCGGCCUGca--CGCGCGCa- -3'
miRNA:   3'- cGCU-CGGCCGGACucggGCGCGCGgg -5'
30731 3' -65.6 NC_006552.1 + 61369 0.67 0.261911
Target:  5'- cGgGAGCCgGGCCaUGuuUUgGCGCGCCg -3'
miRNA:   3'- -CgCUCGG-CCGG-ACucGGgCGCGCGGg -5'
30731 3' -65.6 NC_006552.1 + 61464 0.66 0.300413
Target:  5'- aCGAguGCCGGgaaaccgaucuacCCUG-GCCggucgacuacgUGCGCGCCCg -3'
miRNA:   3'- cGCU--CGGCC-------------GGACuCGG-----------GCGCGCGGG- -5'
30731 3' -65.6 NC_006552.1 + 64124 0.72 0.103836
Target:  5'- cGCaAGCUGuGCCUGAuucgcaacgcaGCUCGCGCcGCCCu -3'
miRNA:   3'- -CGcUCGGC-CGGACU-----------CGGGCGCG-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.