miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30732 3' -53.5 NC_006552.1 + 28841 0.66 0.873289
Target:  5'- cGGGUCGuacuccuggACCacguacuggcgcaGGUUCCAcacgucugCGCGGCc -3'
miRNA:   3'- -UCCAGCuaa------UGG-------------CCAAGGUa-------GCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 15193 0.66 0.866203
Target:  5'- cAGGUCcacggccuuGAUggUGCCGGUcgCC-UUGCGGUu -3'
miRNA:   3'- -UCCAG---------CUA--AUGGCCAa-GGuAGCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 22447 0.66 0.865403
Target:  5'- cAGGUCgugucgcuGAUUACCGccgugucGUUggagUCGUCGCGGUa -3'
miRNA:   3'- -UCCAG--------CUAAUGGC-------CAA----GGUAGCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 25354 0.66 0.858102
Target:  5'- cGGUCa--UGCUGGUgaucuccgaggCCAcCGCGGCg -3'
miRNA:   3'- uCCAGcuaAUGGCCAa----------GGUaGCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 20078 0.67 0.832438
Target:  5'- aGGcGUCGA--ACUGGUUCUugAUCGUcucGGCg -3'
miRNA:   3'- -UC-CAGCUaaUGGCCAAGG--UAGCG---CCG- -5'
30732 3' -53.5 NC_006552.1 + 21857 0.67 0.81428
Target:  5'- cAGGUCGcgcGCCGccagauggUCCAgcaccagCGCGGCa -3'
miRNA:   3'- -UCCAGCuaaUGGCca------AGGUa------GCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 51669 0.7 0.653514
Target:  5'- aAGGUCGAcgccaucaaagggaUGCCGGc-CCAgguaCGCGGCa -3'
miRNA:   3'- -UCCAGCUa-------------AUGGCCaaGGUa---GCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 5255 0.72 0.530379
Target:  5'- cAGGUCGucgcacgccUGCCGGUaguugCCGgcgagcaagUCGCGGCg -3'
miRNA:   3'- -UCCAGCua-------AUGGCCAa----GGU---------AGCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 35300 0.75 0.366504
Target:  5'- cAGGgcgucCGAcauggaUGCCGGaUCCAUUGCGGCg -3'
miRNA:   3'- -UCCa----GCUa-----AUGGCCaAGGUAGCGCCG- -5'
30732 3' -53.5 NC_006552.1 + 48367 1.13 0.001141
Target:  5'- gAGGUCGAUUACCGGUUCCAUCGCGGCg -3'
miRNA:   3'- -UCCAGCUAAUGGCCAAGGUAGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.