miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30732 5' -52.7 NC_006552.1 + 48401 1.08 0.002707
Target:  5'- cGAAACGCACCCGGACGACAACCGAAGc -3'
miRNA:   3'- -CUUUGCGUGGGCCUGCUGUUGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 48307 0.79 0.257044
Target:  5'- cGAAACGCcaACCCGG-CGGCGACCGuuGc -3'
miRNA:   3'- -CUUUGCG--UGGGCCuGCUGUUGGCuuC- -5'
30732 5' -52.7 NC_006552.1 + 23512 0.74 0.446355
Target:  5'- cGAAGCuGguCCUGGACGuaGCAGCCGAAu -3'
miRNA:   3'- -CUUUG-CguGGGCCUGC--UGUUGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 51403 0.74 0.446355
Target:  5'- -cGACGCugCCGGACGcCAauaccGCCGAu- -3'
miRNA:   3'- cuUUGCGugGGCCUGCuGU-----UGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 38946 0.74 0.456207
Target:  5'- aGAAAUGCGgCCGGACGcCAGCgCGAu- -3'
miRNA:   3'- -CUUUGCGUgGGCCUGCuGUUG-GCUuc -5'
30732 5' -52.7 NC_006552.1 + 36415 0.73 0.507114
Target:  5'- gGAGACGCcuugGCuuGGGCGGCAGugUCGGAGa -3'
miRNA:   3'- -CUUUGCG----UGggCCUGCUGUU--GGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 58640 0.73 0.528153
Target:  5'- uGAAcCGCGaCCGGGCGACgAGCCGAu- -3'
miRNA:   3'- -CUUuGCGUgGGCCUGCUG-UUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 62775 0.73 0.538794
Target:  5'- cGAGCGaCGCCUGGACGACuguUCGAGc -3'
miRNA:   3'- cUUUGC-GUGGGCCUGCUGuu-GGCUUc -5'
30732 5' -52.7 NC_006552.1 + 32495 0.72 0.549507
Target:  5'- cGAuGCGCGCgUGGACGGCAucACgGGAGc -3'
miRNA:   3'- -CUuUGCGUGgGCCUGCUGU--UGgCUUC- -5'
30732 5' -52.7 NC_006552.1 + 2985 0.72 0.560285
Target:  5'- gGAGugGauUACCCGG-CGACAacACCGGAGc -3'
miRNA:   3'- -CUUugC--GUGGGCCuGCUGU--UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 11341 0.71 0.603894
Target:  5'- cGAugGCuucCUCGGugACGGCGGCCGAGGu -3'
miRNA:   3'- cUUugCGu--GGGCC--UGCUGUUGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 49378 0.71 0.625879
Target:  5'- cGAACGCAUCUGGcGCGACAaGCUGAu- -3'
miRNA:   3'- cUUUGCGUGGGCC-UGCUGU-UGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 44414 0.7 0.713216
Target:  5'- --uGCGCugCCGGcCGGCGaaACCGGc- -3'
miRNA:   3'- cuuUGCGugGGCCuGCUGU--UGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 63481 0.69 0.734473
Target:  5'- ---cCGCugCCGGcCGccggcgccggaGCAACCGGAGa -3'
miRNA:   3'- cuuuGCGugGGCCuGC-----------UGUUGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 33419 0.69 0.744953
Target:  5'- cGAGGCGCucGCCgUGGACGAUcACCuGGAGc -3'
miRNA:   3'- -CUUUGCG--UGG-GCCUGCUGuUGG-CUUC- -5'
30732 5' -52.7 NC_006552.1 + 24789 0.69 0.755319
Target:  5'- ----aGCACCUGGGCG-CGggugaugacGCCGGAGa -3'
miRNA:   3'- cuuugCGUGGGCCUGCuGU---------UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 5808 0.69 0.765559
Target:  5'- -cAACGCGCCCgcaaGGGCGcCAGCCa--- -3'
miRNA:   3'- cuUUGCGUGGG----CCUGCuGUUGGcuuc -5'
30732 5' -52.7 NC_006552.1 + 18145 0.68 0.805037
Target:  5'- -uAACGguguaGCCCGGGCGGauuguuguGCCGGAGa -3'
miRNA:   3'- cuUUGCg----UGGGCCUGCUgu------UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 61441 0.68 0.805037
Target:  5'- ---cCGCGCCCGGgccguACGGCAauacgaguGCCGGGa -3'
miRNA:   3'- cuuuGCGUGGGCC-----UGCUGU--------UGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 16821 0.68 0.805037
Target:  5'- uGGAGCcaGCGCCCGaACGccACGACCGAc- -3'
miRNA:   3'- -CUUUG--CGUGGGCcUGC--UGUUGGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.