miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30732 5' -52.7 NC_006552.1 + 48307 0.79 0.257044
Target:  5'- cGAAACGCcaACCCGG-CGGCGACCGuuGc -3'
miRNA:   3'- -CUUUGCG--UGGGCCuGCUGUUGGCuuC- -5'
30732 5' -52.7 NC_006552.1 + 48401 1.08 0.002707
Target:  5'- cGAAACGCACCCGGACGACAACCGAAGc -3'
miRNA:   3'- -CUUUGCGUGGGCCUGCUGUUGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 49378 0.71 0.625879
Target:  5'- cGAACGCAUCUGGcGCGACAaGCUGAu- -3'
miRNA:   3'- cUUUGCGUGGGCC-UGCUGU-UGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 50296 0.66 0.889761
Target:  5'- -uGGCGCcCgCCGGGCG-CucACCGAAGu -3'
miRNA:   3'- cuUUGCGuG-GGCCUGCuGu-UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 50402 0.66 0.9031
Target:  5'- cGAAACGCAaagccauCUgGGugGGCGGCCuGAu- -3'
miRNA:   3'- -CUUUGCGU-------GGgCCugCUGUUGG-CUuc -5'
30732 5' -52.7 NC_006552.1 + 51403 0.74 0.446355
Target:  5'- -cGACGCugCCGGACGcCAauaccGCCGAu- -3'
miRNA:   3'- cuUUGCGugGGCCUGCuGU-----UGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 54943 0.67 0.823733
Target:  5'- aGGAGCGgGCaCUGGACGAC-GCUGGu- -3'
miRNA:   3'- -CUUUGCgUG-GGCCUGCUGuUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 57423 0.67 0.841624
Target:  5'- ----gGC-CCUGGACGAC-ACCGAc- -3'
miRNA:   3'- cuuugCGuGGGCCUGCUGuUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 58640 0.73 0.528153
Target:  5'- uGAAcCGCGaCCGGGCGACgAGCCGAu- -3'
miRNA:   3'- -CUUuGCGUgGGCCUGCUG-UUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 61441 0.68 0.805037
Target:  5'- ---cCGCGCCCGGgccguACGGCAauacgaguGCCGGGa -3'
miRNA:   3'- cuuuGCGUGGGCC-----UGCUGU--------UGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 62775 0.73 0.538794
Target:  5'- cGAGCGaCGCCUGGACGACuguUCGAGc -3'
miRNA:   3'- cUUUGC-GUGGGCCUGCUGuu-GGCUUc -5'
30732 5' -52.7 NC_006552.1 + 63481 0.69 0.734473
Target:  5'- ---cCGCugCCGGcCGccggcgccggaGCAACCGGAGa -3'
miRNA:   3'- cuuuGCGugGGCCuGC-----------UGUUGGCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.