miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 3' -56.5 NC_006552.1 + 25950 0.66 0.663292
Target:  5'- aGGACUGCAcuACCAGgCaCCGgagccCGCGAUg -3'
miRNA:   3'- -CCUGACGUc-UGGUCgG-GGUa----GCGUUA- -5'
30733 3' -56.5 NC_006552.1 + 27519 0.66 0.663292
Target:  5'- cGcCUGCAGACCccgcGGCUCCAgguaGCGAc -3'
miRNA:   3'- cCuGACGUCUGG----UCGGGGUag--CGUUa -5'
30733 3' -56.5 NC_006552.1 + 50674 0.66 0.663292
Target:  5'- cGACUGagcuauUCGGCCCCGUCgGCAAg -3'
miRNA:   3'- cCUGACgucu--GGUCGGGGUAG-CGUUa -5'
30733 3' -56.5 NC_006552.1 + 5063 0.66 0.641444
Target:  5'- -uGCUGgccacCAGGCCAGCCagcgCUAUCGCAGc -3'
miRNA:   3'- ccUGAC-----GUCUGGUCGG----GGUAGCGUUa -5'
30733 3' -56.5 NC_006552.1 + 33369 0.66 0.641444
Target:  5'- aGGGCcaGCacGGGCCGGCCCU-UCGUAGg -3'
miRNA:   3'- -CCUGa-CG--UCUGGUCGGGGuAGCGUUa -5'
30733 3' -56.5 NC_006552.1 + 8674 0.66 0.641444
Target:  5'- cGGC-GcCAGAUCAGCCgCAUCGCu-- -3'
miRNA:   3'- cCUGaC-GUCUGGUCGGgGUAGCGuua -5'
30733 3' -56.5 NC_006552.1 + 52457 0.66 0.641444
Target:  5'- gGGGCUGcCGGAUCAGCaaacgCCAgCGCGu- -3'
miRNA:   3'- -CCUGAC-GUCUGGUCGg----GGUaGCGUua -5'
30733 3' -56.5 NC_006552.1 + 34462 0.67 0.561975
Target:  5'- aGGAC-GCGGAUcggcgaauccucagCAGCCUCGUCGCc-- -3'
miRNA:   3'- -CCUGaCGUCUG--------------GUCGGGGUAGCGuua -5'
30733 3' -56.5 NC_006552.1 + 4300 0.68 0.512165
Target:  5'- -aACUGCAGauuagaaguGCCGGCCCCgAUUGCu-- -3'
miRNA:   3'- ccUGACGUC---------UGGUCGGGG-UAGCGuua -5'
30733 3' -56.5 NC_006552.1 + 22368 0.72 0.326952
Target:  5'- cGGugUGCAGcACCAGCagCCCGUacaGCAc- -3'
miRNA:   3'- -CCugACGUC-UGGUCG--GGGUAg--CGUua -5'
30733 3' -56.5 NC_006552.1 + 48257 1.07 0.001095
Target:  5'- gGGACUGCAGACCAGCCCCAUCGCAAUc -3'
miRNA:   3'- -CCUGACGUCUGGUCGGGGUAGCGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.