miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30736 3' -57.9 NC_006552.1 + 8496 0.66 0.593139
Target:  5'- cGGcCGUCaGAcgCAuGGCGCGCUCAGCc -3'
miRNA:   3'- -CC-GCAGaCUugGU-CCGCGCGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 11881 0.67 0.582509
Target:  5'- cGGCGacCUucuCCAGGCGCGCggCCAAUUu -3'
miRNA:   3'- -CCGCa-GAcuuGGUCCGCGCG--GGUUGA- -5'
30736 3' -57.9 NC_006552.1 + 17971 0.67 0.561374
Target:  5'- cGGCGUuguaCUGAGCCAa-CGCGUCCGGg- -3'
miRNA:   3'- -CCGCA----GACUUGGUccGCGCGGGUUga -5'
30736 3' -57.9 NC_006552.1 + 43110 0.67 0.530091
Target:  5'- aGGUGUUaucGGCCAGGCGCaGCUUAAUg -3'
miRNA:   3'- -CCGCAGac-UUGGUCCGCG-CGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 59586 0.68 0.509592
Target:  5'- cGGCGUggagCUGGACCcggcucaagcgcAGGC-CGCCUGGCa -3'
miRNA:   3'- -CCGCA----GACUUGG------------UCCGcGCGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 62686 0.68 0.499467
Target:  5'- aGGCG-CUGGACaaga-GCGCCCAGCc -3'
miRNA:   3'- -CCGCaGACUUGguccgCGCGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 53972 0.68 0.499467
Target:  5'- cGGCGgcaagcCUGAgcaggcagGCCAGGCGCgugGCCCuGGCc -3'
miRNA:   3'- -CCGCa-----GACU--------UGGUCCGCG---CGGG-UUGa -5'
30736 3' -57.9 NC_006552.1 + 61365 0.69 0.45992
Target:  5'- -aCGUCggGAGCCGGGCcauguuuugGCGCgCCGGCg -3'
miRNA:   3'- ccGCAGa-CUUGGUCCG---------CGCG-GGUUGa -5'
30736 3' -57.9 NC_006552.1 + 44605 0.69 0.45992
Target:  5'- aGGCGgcaaUGAacGCCAuGcGCGCGCCCAc-- -3'
miRNA:   3'- -CCGCag--ACU--UGGU-C-CGCGCGGGUuga -5'
30736 3' -57.9 NC_006552.1 + 6782 0.69 0.412027
Target:  5'- cGGCGUCUucggcGAacggcaaGCCAccGGCGCcCCCGACg -3'
miRNA:   3'- -CCGCAGA-----CU-------UGGU--CCGCGcGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 62992 0.69 0.410212
Target:  5'- cGGCGgacCUGcgccGCCAGGUGUuggagaaaauggccGCCCAGCg -3'
miRNA:   3'- -CCGCa--GACu---UGGUCCGCG--------------CGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 60434 0.7 0.403899
Target:  5'- cGCGcaCUGGACCAGGCcCGCCaGGCa -3'
miRNA:   3'- cCGCa-GACUUGGUCCGcGCGGgUUGa -5'
30736 3' -57.9 NC_006552.1 + 34156 0.71 0.336284
Target:  5'- uGCGcCaGAGCCuGGC-CGCCCAGCa -3'
miRNA:   3'- cCGCaGaCUUGGuCCGcGCGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 54133 0.72 0.284205
Target:  5'- -uCGUCUGAgcGCCGGGC-CGCCCGGa- -3'
miRNA:   3'- ccGCAGACU--UGGUCCGcGCGGGUUga -5'
30736 3' -57.9 NC_006552.1 + 26268 0.74 0.204709
Target:  5'- aGCGUCggcagGAugACCGuGGcCGCGCCCAGCg -3'
miRNA:   3'- cCGCAGa----CU--UGGU-CC-GCGCGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 48506 0.75 0.174985
Target:  5'- cGGC--CUGAGCCc-GCGCGCCCAGCa -3'
miRNA:   3'- -CCGcaGACUUGGucCGCGCGGGUUGa -5'
30736 3' -57.9 NC_006552.1 + 45866 1.09 0.00072
Target:  5'- gGGCGUCUGAACCAGGCGCGCCCAACUc -3'
miRNA:   3'- -CCGCAGACUUGGUCCGCGCGGGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.