miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30736 5' -55.1 NC_006552.1 + 33395 0.66 0.762119
Target:  5'- -aGGGCGgcGGCGcuUAGaCuGCGCCg -3'
miRNA:   3'- caUCUGCuuCCGCuuGUC-GuCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 2530 0.66 0.741399
Target:  5'- cUGGucaaccuCGucGGCGAACAGUcagAGCGCUa -3'
miRNA:   3'- cAUCu------GCuuCCGCUUGUCG---UCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 4812 0.66 0.741399
Target:  5'- --cGGCGggGGCGAugcGCAcGCGCa- -3'
miRNA:   3'- cauCUGCuuCCGCUuguCGU-CGCGga -5'
30736 5' -55.1 NC_006552.1 + 30077 0.66 0.709518
Target:  5'- aUGGACGAu-GCGggUAGCAGgcuggccaGCCUg -3'
miRNA:   3'- cAUCUGCUucCGCuuGUCGUCg-------CGGA- -5'
30736 5' -55.1 NC_006552.1 + 49729 0.67 0.698723
Target:  5'- --cGAgGAAGGCauuACGGCGauGCGCCg -3'
miRNA:   3'- cauCUgCUUCCGcu-UGUCGU--CGCGGa -5'
30736 5' -55.1 NC_006552.1 + 26488 0.67 0.664898
Target:  5'- cGUAGgugccuugacucaACGAuccGGCGccugccaccagcAGCGGCGGCGCCg -3'
miRNA:   3'- -CAUC-------------UGCUu--CCGC------------UUGUCGUCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 5275 0.67 0.655008
Target:  5'- gGUAGuuGccGGCGAGCAagucGCGGCGCa- -3'
miRNA:   3'- -CAUCugCuuCCGCUUGU----CGUCGCGga -5'
30736 5' -55.1 NC_006552.1 + 5750 0.68 0.643999
Target:  5'- --cGAUGAcGGCGAcCAGCA-CGCCg -3'
miRNA:   3'- cauCUGCUuCCGCUuGUCGUcGCGGa -5'
30736 5' -55.1 NC_006552.1 + 42712 0.68 0.643999
Target:  5'- cUGGGCGGAu-CGAACuGCGGUGCCg -3'
miRNA:   3'- cAUCUGCUUccGCUUGuCGUCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 36416 0.68 0.63298
Target:  5'- -gAGACGccuuGGCuuGGGCGGCAGUGUCg -3'
miRNA:   3'- caUCUGCuu--CCG--CUUGUCGUCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 6782 0.68 0.599956
Target:  5'- --cGGCGucuucGGCGAACGGCAagccaccgGCGCCc -3'
miRNA:   3'- cauCUGCuu---CCGCUUGUCGU--------CGCGGa -5'
30736 5' -55.1 NC_006552.1 + 26302 0.68 0.58899
Target:  5'- gGUAGuCGccGGCcAACAGCAGCucGCCa -3'
miRNA:   3'- -CAUCuGCuuCCGcUUGUCGUCG--CGGa -5'
30736 5' -55.1 NC_006552.1 + 28654 0.69 0.570437
Target:  5'- cGUAGGCaaucauggcugcaguGGUGAucuGCGGCGGCGCCa -3'
miRNA:   3'- -CAUCUGcuu------------CCGCU---UGUCGUCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 21407 0.69 0.556346
Target:  5'- -cAGGCGAAGcGUGAACGugaAGUGCCUg -3'
miRNA:   3'- caUCUGCUUC-CGCUUGUcg-UCGCGGA- -5'
30736 5' -55.1 NC_006552.1 + 4728 0.69 0.553108
Target:  5'- cGUAGGCcGAGGCGGcgucuccugcaccaGCuucGGCGGUGCCg -3'
miRNA:   3'- -CAUCUGcUUCCGCU--------------UG---UCGUCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 33431 0.72 0.40831
Target:  5'- cGUGGACGAucaccuGGagcuugcccgccuccGCG-ACGGCAGCGCCUu -3'
miRNA:   3'- -CAUCUGCU------UC---------------CGCuUGUCGUCGCGGA- -5'
30736 5' -55.1 NC_006552.1 + 2775 0.73 0.351576
Target:  5'- gGUGGcCGAGGGCGGGCcGCGGaaacaGCCg -3'
miRNA:   3'- -CAUCuGCUUCCGCUUGuCGUCg----CGGa -5'
30736 5' -55.1 NC_006552.1 + 20663 0.74 0.319063
Target:  5'- -cGGGCacGGGCGAACAGCgccugcucgaugGGCGCCg -3'
miRNA:   3'- caUCUGcuUCCGCUUGUCG------------UCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 33245 0.75 0.27462
Target:  5'- -cGGGCacucGGCGAACGGUGGCGCCa -3'
miRNA:   3'- caUCUGcuu-CCGCUUGUCGUCGCGGa -5'
30736 5' -55.1 NC_006552.1 + 26426 0.76 0.235273
Target:  5'- ---cGCGAAGGCGAuCAGCgacGGCGCCg -3'
miRNA:   3'- caucUGCUUCCGCUuGUCG---UCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.