miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30737 5' -56.9 NC_006552.1 + 2049 0.68 0.577761
Target:  5'- gACAGGcgcUUGAgCGCGCCGGCgucgugCGCGGCc -3'
miRNA:   3'- -UGUCU---AGCUaGUGUGGCCG------GCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 53802 0.68 0.55655
Target:  5'- cCGGGUCGugcucUUugGCCGGCuggccgaaauCGCAGCGc -3'
miRNA:   3'- uGUCUAGCu----AGugUGGCCG----------GCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 26685 0.68 0.53557
Target:  5'- uGCGGAUCGAccuuUCccCACUGGUCGCccagGGCGc -3'
miRNA:   3'- -UGUCUAGCU----AGu-GUGGCCGGCG----UCGC- -5'
30737 5' -56.9 NC_006552.1 + 33199 0.68 0.525183
Target:  5'- cCAGGUgGAguugCACGCCGGCCaggauGCcGCGc -3'
miRNA:   3'- uGUCUAgCUa---GUGUGGCCGG-----CGuCGC- -5'
30737 5' -56.9 NC_006552.1 + 23670 0.68 0.525183
Target:  5'- gUAGAaCGGUC-CACUGGCCacGCGGCu -3'
miRNA:   3'- uGUCUaGCUAGuGUGGCCGG--CGUCGc -5'
30737 5' -56.9 NC_006552.1 + 28718 0.7 0.454944
Target:  5'- gGCAuuguuGUCGAUCugcgggaaGCCGGCCGgCGGCGa -3'
miRNA:   3'- -UGUc----UAGCUAGug------UGGCCGGC-GUCGC- -5'
30737 5' -56.9 NC_006552.1 + 5685 0.7 0.435812
Target:  5'- gGCAGcgcucUCGGcugauUCGCGgCGGUCGCGGCGa -3'
miRNA:   3'- -UGUCu----AGCU-----AGUGUgGCCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 10826 0.7 0.417153
Target:  5'- cACAGG-CGGUUguuCGCCgGGCUGCGGCGc -3'
miRNA:   3'- -UGUCUaGCUAGu--GUGG-CCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 2085 0.71 0.398989
Target:  5'- uGCuGAUCGAacUCgACGCCGGCgGCAcGCu -3'
miRNA:   3'- -UGuCUAGCU--AG-UGUGGCCGgCGU-CGc -5'
30737 5' -56.9 NC_006552.1 + 5253 0.71 0.38134
Target:  5'- aGCAGGUCGucgCACGCCuGCCGguaguugcCGGCGa -3'
miRNA:   3'- -UGUCUAGCua-GUGUGGcCGGC--------GUCGC- -5'
30737 5' -56.9 NC_006552.1 + 5469 0.71 0.372713
Target:  5'- gGCGGAUCGGUCAgcuuCACCgauuGGCCauucucGUAGCGg -3'
miRNA:   3'- -UGUCUAGCUAGU----GUGG----CCGG------CGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 35511 0.83 0.063539
Target:  5'- aACAGuUCGAUgACAUCGGCCGCGGUGc -3'
miRNA:   3'- -UGUCuAGCUAgUGUGGCCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 45741 1.09 0.000889
Target:  5'- gACAGAUCGAUCACACCGGCCGCAGCGa -3'
miRNA:   3'- -UGUCUAGCUAGUGUGGCCGGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.