Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30738 | 5' | -49.2 | NC_006552.1 | + | 64786 | 0.68 | 0.939876 |
Target: 5'- -cCCUGGGcauccugcCGGAaacggcgUUUCCGGCCg -3' miRNA: 3'- cuGGACCCa-------GCCUauaa---AAAGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 48691 | 0.69 | 0.923048 |
Target: 5'- cGCCcGGGUUGGcgccg--UCCGGCCc -3' miRNA: 3'- cUGGaCCCAGCCuauaaaaAGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 45521 | 0.69 | 0.910384 |
Target: 5'- -nCCUGaa-CGGAUuUUUUUCCGACCu -3' miRNA: 3'- cuGGACccaGCCUAuAAAAAGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 16182 | 0.72 | 0.798172 |
Target: 5'- uACCUGGGUagCGGAguucuggUCGACCg -3' miRNA: 3'- cUGGACCCA--GCCUauaaaaaGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 45589 | 0.73 | 0.750943 |
Target: 5'- uGCCUGcaUCGGAUuUUUcUCCGACCu -3' miRNA: 3'- cUGGACccAGCCUAuAAAaAGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 45494 | 0.8 | 0.35221 |
Target: 5'- uACCUGauuuGUCGGAgAUUUUUCCGACCc -3' miRNA: 3'- cUGGACc---CAGCCUaUAAAAAGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 45562 | 0.86 | 0.159085 |
Target: 5'- cGAUCUuGGUCGGAgAUUUUUCCGACCu -3' miRNA: 3'- -CUGGAcCCAGCCUaUAAAAAGGCUGG- -5' |
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30738 | 5' | -49.2 | NC_006552.1 | + | 45646 | 1.13 | 0.003433 |
Target: 5'- cGACCUGGGUCGGAUAUUUUUCCGACCc -3' miRNA: 3'- -CUGGACCCAGCCUAUAAAAAGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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