Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30739 | 3' | -61 | NC_006552.1 | + | 48499 | 0.71 | 0.246504 |
Target: 5'- uGCGaGcCGGCCUGaGCCCGCGCGc-- -3' miRNA: 3'- cCGCgCaGCCGGAC-CGGGUGUGCuag -5' |
|||||||
30739 | 3' | -61 | NC_006552.1 | + | 57413 | 0.71 | 0.248937 |
Target: 5'- ----aGUaCGGCCUGGCCCuggacgacaccgacgACGCGAUCg -3' miRNA: 3'- ccgcgCA-GCCGGACCGGG---------------UGUGCUAG- -5' |
|||||||
30739 | 3' | -61 | NC_006552.1 | + | 21018 | 0.7 | 0.258867 |
Target: 5'- cGGCGCGUCGGguaggucguCCaUGucGCCCACAUccaGGUCg -3' miRNA: 3'- -CCGCGCAGCC---------GG-AC--CGGGUGUG---CUAG- -5' |
|||||||
30739 | 3' | -61 | NC_006552.1 | + | 32970 | 0.69 | 0.30613 |
Target: 5'- cGCGCGUCGGCgucCUGGCUCccaGCG-UCc -3' miRNA: 3'- cCGCGCAGCCG---GACCGGGug-UGCuAG- -5' |
|||||||
30739 | 3' | -61 | NC_006552.1 | + | 49171 | 0.69 | 0.30613 |
Target: 5'- cGGCugcccgcacuGCGgCGGCCUGGUCCGgcUGGUCa -3' miRNA: 3'- -CCG----------CGCaGCCGGACCGGGUguGCUAG- -5' |
|||||||
30739 | 3' | -61 | NC_006552.1 | + | 12371 | 0.66 | 0.494749 |
Target: 5'- cGGCGCGcuUCuGCaacGGCCUGCGCG-UCg -3' miRNA: 3'- -CCGCGC--AGcCGga-CCGGGUGUGCuAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home