miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30739 3' -61 NC_006552.1 + 45206 1.11 0.000261
Target:  5'- uGGCGCGUCGGCCUGGCCCACACGAUCg -3'
miRNA:   3'- -CCGCGCAGCCGGACCGGGUGUGCUAG- -5'
30739 3' -61 NC_006552.1 + 53998 0.77 0.094214
Target:  5'- aGGCGCGU-GGcCCUGGCCCuggcCGCGAg- -3'
miRNA:   3'- -CCGCGCAgCC-GGACCGGGu---GUGCUag -5'
30739 3' -61 NC_006552.1 + 32309 0.75 0.129894
Target:  5'- cGGCacacgGCGUCGGCCUGGCUCucgugGAUCa -3'
miRNA:   3'- -CCG-----CGCAGCCGGACCGGGugug-CUAG- -5'
30739 3' -61 NC_006552.1 + 13684 0.75 0.133375
Target:  5'- cGgGCGUCcagugccGCCUGGCgCACGCGAUCc -3'
miRNA:   3'- cCgCGCAGc------CGGACCGgGUGUGCUAG- -5'
30739 3' -61 NC_006552.1 + 11264 0.74 0.156121
Target:  5'- cGGauCGCGUCGGCCaauaUGGCCCAUgccgGCGGa- -3'
miRNA:   3'- -CC--GCGCAGCCGG----ACCGGGUG----UGCUag -5'
30739 3' -61 NC_006552.1 + 15506 0.73 0.16833
Target:  5'- uGCGCGUCaGCCUugccuugGGCCUGCugGAUg -3'
miRNA:   3'- cCGCGCAGcCGGA-------CCGGGUGugCUAg -5'
30739 3' -61 NC_006552.1 + 32649 0.72 0.186571
Target:  5'- aGCGCGcuccugcUgGGCCUGcugaGCCUGCGCGAUCa -3'
miRNA:   3'- cCGCGC-------AgCCGGAC----CGGGUGUGCUAG- -5'
30739 3' -61 NC_006552.1 + 48499 0.71 0.246504
Target:  5'- uGCGaGcCGGCCUGaGCCCGCGCGc-- -3'
miRNA:   3'- cCGCgCaGCCGGAC-CGGGUGUGCuag -5'
30739 3' -61 NC_006552.1 + 57413 0.71 0.248937
Target:  5'- ----aGUaCGGCCUGGCCCuggacgacaccgacgACGCGAUCg -3'
miRNA:   3'- ccgcgCA-GCCGGACCGGG---------------UGUGCUAG- -5'
30739 3' -61 NC_006552.1 + 21018 0.7 0.258867
Target:  5'- cGGCGCGUCGGguaggucguCCaUGucGCCCACAUccaGGUCg -3'
miRNA:   3'- -CCGCGCAGCC---------GG-AC--CGGGUGUG---CUAG- -5'
30739 3' -61 NC_006552.1 + 49171 0.69 0.30613
Target:  5'- cGGCugcccgcacuGCGgCGGCCUGGUCCGgcUGGUCa -3'
miRNA:   3'- -CCG----------CGCaGCCGGACCGGGUguGCUAG- -5'
30739 3' -61 NC_006552.1 + 32970 0.69 0.30613
Target:  5'- cGCGCGUCGGCgucCUGGCUCccaGCG-UCc -3'
miRNA:   3'- cCGCGCAGCCG---GACCGGGug-UGCuAG- -5'
30739 3' -61 NC_006552.1 + 7213 0.69 0.328323
Target:  5'- cGGCGCGcagCGaGCCgcugccgcgGGCCUGCGCcAUCa -3'
miRNA:   3'- -CCGCGCa--GC-CGGa--------CCGGGUGUGcUAG- -5'
30739 3' -61 NC_006552.1 + 43864 0.68 0.343768
Target:  5'- uGCGCG-CGacuaaCUGGCCCAUGCGGUg -3'
miRNA:   3'- cCGCGCaGCcg---GACCGGGUGUGCUAg -5'
30739 3' -61 NC_006552.1 + 13621 0.68 0.351683
Target:  5'- uGCGCcuuGUCGGCacgGGCCUGCucggcggccugGCGAUCu -3'
miRNA:   3'- cCGCG---CAGCCGga-CCGGGUG-----------UGCUAG- -5'
30739 3' -61 NC_006552.1 + 17606 0.68 0.382928
Target:  5'- cGGCGCGgguuuggaaaccccUGGCCUcuugcucaccagccaGGCgCugGCGAUCg -3'
miRNA:   3'- -CCGCGCa-------------GCCGGA---------------CCGgGugUGCUAG- -5'
30739 3' -61 NC_006552.1 + 12947 0.68 0.384622
Target:  5'- aGCGCGcUGGCCuUGGC-CugGCGGUg -3'
miRNA:   3'- cCGCGCaGCCGG-ACCGgGugUGCUAg -5'
30739 3' -61 NC_006552.1 + 9160 0.67 0.39317
Target:  5'- uGCGCGUa-GCCgcucgcGGCauCCGCGCGAUCc -3'
miRNA:   3'- cCGCGCAgcCGGa-----CCG--GGUGUGCUAG- -5'
30739 3' -61 NC_006552.1 + 57316 0.67 0.400968
Target:  5'- cGCGCGcagUGGCCUGGCgCAgcucgacaucuucCACGAc- -3'
miRNA:   3'- cCGCGCa--GCCGGACCGgGU-------------GUGCUag -5'
30739 3' -61 NC_006552.1 + 37974 0.67 0.427659
Target:  5'- gGGCGUcuugcaCGGCCUGGUcgaucugCUGCugGAUCu -3'
miRNA:   3'- -CCGCGca----GCCGGACCG-------GGUGugCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.