miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30739 5' -53.4 NC_006552.1 + 50513 0.66 0.821361
Target:  5'- --cGGC--GCCGGCAGCCGucaaGCGa- -3'
miRNA:   3'- cuuUCGaaCGGCCGUUGGCua--CGCaa -5'
30739 5' -53.4 NC_006552.1 + 15836 0.66 0.820417
Target:  5'- -cGGGCUUGCCGGCGAacaaauuCCag-GCGg- -3'
miRNA:   3'- cuUUCGAACGGCCGUU-------GGcuaCGCaa -5'
30739 5' -53.4 NC_006552.1 + 38825 0.66 0.811836
Target:  5'- cGGAAGCcgaagaaCGGCAcguaggggaaguGCCGGUGCGUg -3'
miRNA:   3'- -CUUUCGaacg---GCCGU------------UGGCUACGCAa -5'
30739 5' -53.4 NC_006552.1 + 52941 0.67 0.761479
Target:  5'- ---cGCcugcGCCGGCGcccgccGCCGGUGCGg- -3'
miRNA:   3'- cuuuCGaa--CGGCCGU------UGGCUACGCaa -5'
30739 5' -53.4 NC_006552.1 + 61038 0.67 0.746692
Target:  5'- -cAGGCgcGCUGGCGGCCGAgcauccauaugccGCGUUg -3'
miRNA:   3'- cuUUCGaaCGGCCGUUGGCUa------------CGCAA- -5'
30739 5' -53.4 NC_006552.1 + 51998 0.68 0.707655
Target:  5'- cGAGAGCUUGCCgcGGCGcgccagcaacucGCCGA-GCa-- -3'
miRNA:   3'- -CUUUCGAACGG--CCGU------------UGGCUaCGcaa -5'
30739 5' -53.4 NC_006552.1 + 11731 0.68 0.685497
Target:  5'- cGAuGGcCUUGCCGGUgaGGCCGGaGCGg- -3'
miRNA:   3'- -CUuUC-GAACGGCCG--UUGGCUaCGCaa -5'
30739 5' -53.4 NC_006552.1 + 48460 0.68 0.674332
Target:  5'- --uGGCUcGCUGGCGuguCCGGuUGCGUUg -3'
miRNA:   3'- cuuUCGAaCGGCCGUu--GGCU-ACGCAA- -5'
30739 5' -53.4 NC_006552.1 + 28737 0.69 0.606856
Target:  5'- gGGAAGCcgGCCGGCGgcgaaggcauGCCGAUG-GUg -3'
miRNA:   3'- -CUUUCGaaCGGCCGU----------UGGCUACgCAa -5'
30739 5' -53.4 NC_006552.1 + 41976 0.71 0.507715
Target:  5'- cGAAGCcgUGgcaguaCCGGCAgcaACCGAUGCGUa -3'
miRNA:   3'- cUUUCGa-AC------GGCCGU---UGGCUACGCAa -5'
30739 5' -53.4 NC_006552.1 + 45242 1.05 0.002688
Target:  5'- cGAAAGCUUGCCGGCAACCGAUGCGUUc -3'
miRNA:   3'- -CUUUCGAACGGCCGUUGGCUACGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.