miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3074 3' -59.4 NC_001493.1 + 124678 0.66 0.75066
Target:  5'- cGGGGUCaUCC-CCGCGaccgCGCUCcCGg -3'
miRNA:   3'- uUCCCAGcAGGcGGCGCa---GUGAGaGC- -5'
3074 3' -59.4 NC_001493.1 + 9123 0.66 0.75066
Target:  5'- cGGGGUCaUCC-CCGCGaccgCGCUCcCGg -3'
miRNA:   3'- uUCCCAGcAGGcGGCGCa---GUGAGaGC- -5'
3074 3' -59.4 NC_001493.1 + 102449 0.66 0.72182
Target:  5'- gGGGGGUCGcgaCgGCCG-GUC-CUCUCa -3'
miRNA:   3'- -UUCCCAGCa--GgCGGCgCAGuGAGAGc -5'
3074 3' -59.4 NC_001493.1 + 14696 0.66 0.72182
Target:  5'- -cGGuccGUCGUCCGCCG-G-CGCUgCUCGa -3'
miRNA:   3'- uuCC---CAGCAGGCGGCgCaGUGA-GAGC- -5'
3074 3' -59.4 NC_001493.1 + 80516 0.67 0.702207
Target:  5'- gGAGGGUCGUCCaGCUGUuuaacGUgCGgUCUCc -3'
miRNA:   3'- -UUCCCAGCAGG-CGGCG-----CA-GUgAGAGc -5'
3074 3' -59.4 NC_001493.1 + 50919 0.68 0.632203
Target:  5'- uGGuGGUCGUUgaugacCCGCGUgGCUCUCGa -3'
miRNA:   3'- uUC-CCAGCAGgc----GGCGCAgUGAGAGC- -5'
3074 3' -59.4 NC_001493.1 + 126179 0.71 0.475668
Target:  5'- -cGGGUCcUCCGCgGuCGagACUCUCGg -3'
miRNA:   3'- uuCCCAGcAGGCGgC-GCagUGAGAGC- -5'
3074 3' -59.4 NC_001493.1 + 10625 0.71 0.475668
Target:  5'- -cGGGUCcUCCGCgGuCGagACUCUCGg -3'
miRNA:   3'- uuCCCAGcAGGCGgC-GCagUGAGAGC- -5'
3074 3' -59.4 NC_001493.1 + 130250 0.72 0.408102
Target:  5'- -cGGuccGUCGUCCGCCGCGcugcucgaauacaccUCAUUUUCGg -3'
miRNA:   3'- uuCC---CAGCAGGCGGCGC---------------AGUGAGAGC- -5'
3074 3' -59.4 NC_001493.1 + 29765 0.73 0.348387
Target:  5'- cGAGGGUCGUCuCGCCcuucaGCGUUcccuucagGCUCUCc -3'
miRNA:   3'- -UUCCCAGCAG-GCGG-----CGCAG--------UGAGAGc -5'
3074 3' -59.4 NC_001493.1 + 110684 0.74 0.326019
Target:  5'- cAGGGUCGacgaUCGCCGUGUCACgcaUCGg -3'
miRNA:   3'- uUCCCAGCa---GGCGGCGCAGUGag-AGC- -5'
3074 3' -59.4 NC_001493.1 + 52874 0.93 0.015511
Target:  5'- aAAGGGUCGUCCGCCGCGUCA-UCUCGc -3'
miRNA:   3'- -UUCCCAGCAGGCGGCGCAGUgAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.