miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3074 5' -53.3 NC_001493.1 + 100196 0.66 0.973601
Target:  5'- cCUCGGGGuUCGGUCcCGcGGuccUGAGCUg -3'
miRNA:   3'- -GAGCCUC-AGUCAGaGCuCCu--GCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 61685 0.66 0.973601
Target:  5'- cCUCGGAuUguGUCagGcAGGGCGuGACCa -3'
miRNA:   3'- -GAGCCUcAguCAGagC-UCCUGC-UUGG- -5'
3074 5' -53.3 NC_001493.1 + 3224 0.66 0.967802
Target:  5'- -gUGGAGUCAGaggCggaCGAGGAccCGGACg -3'
miRNA:   3'- gaGCCUCAGUCa--Ga--GCUCCU--GCUUGg -5'
3074 5' -53.3 NC_001493.1 + 118778 0.66 0.967802
Target:  5'- -gUGGAGUCAGaggCggaCGAGGAccCGGACg -3'
miRNA:   3'- gaGCCUCAGUCa--Ga--GCUCCU--GCUUGg -5'
3074 5' -53.3 NC_001493.1 + 113628 0.66 0.966859
Target:  5'- -gUGGAGcgacccugugugacUCGuGUCUCG-GGGCGGACUg -3'
miRNA:   3'- gaGCCUC--------------AGU-CAGAGCuCCUGCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 97085 0.66 0.964917
Target:  5'- cCUCGGGGUCuGcccggccguuaUCgaaaaaacagaauugCGGGGACGAcucGCCg -3'
miRNA:   3'- -GAGCCUCAGuC-----------AGa--------------GCUCCUGCU---UGG- -5'
3074 5' -53.3 NC_001493.1 + 30495 0.66 0.964586
Target:  5'- aCUCGGGGcCcuGGUCggGGGGAuCGggUCg -3'
miRNA:   3'- -GAGCCUCaG--UCAGagCUCCU-GCuuGG- -5'
3074 5' -53.3 NC_001493.1 + 39821 0.66 0.961151
Target:  5'- gUCGGGGUUucuAGgaacgCUCGAGGAaaAACUg -3'
miRNA:   3'- gAGCCUCAG---UCa----GAGCUCCUgcUUGG- -5'
3074 5' -53.3 NC_001493.1 + 42161 0.67 0.953606
Target:  5'- -aCGGuGUC--UCUCGGGGAuCGGACg -3'
miRNA:   3'- gaGCCuCAGucAGAGCUCCU-GCUUGg -5'
3074 5' -53.3 NC_001493.1 + 10796 0.67 0.953205
Target:  5'- aUCGGGcgcGUCccgagAGUCUCGAccgcggaggacccGGAuCGAGCCg -3'
miRNA:   3'- gAGCCU---CAG-----UCAGAGCU-------------CCU-GCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 126350 0.67 0.953205
Target:  5'- aUCGGGcgcGUCccgagAGUCUCGAccgcggaggacccGGAuCGAGCCg -3'
miRNA:   3'- gAGCCU---CAG-----UCAGAGCU-------------CCU-GCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 16268 0.68 0.935698
Target:  5'- aCUC-GAGg-AGUCUCGAGcGGuCGAGCCc -3'
miRNA:   3'- -GAGcCUCagUCAGAGCUC-CU-GCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 131822 0.68 0.935698
Target:  5'- aCUC-GAGg-AGUCUCGAGcGGuCGAGCCc -3'
miRNA:   3'- -GAGcCUCagUCAGAGCUC-CU-GCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 9283 0.68 0.925295
Target:  5'- --gGGAGcgCGGUCgCGGGGAUGAcCCc -3'
miRNA:   3'- gagCCUCa-GUCAGaGCUCCUGCUuGG- -5'
3074 5' -53.3 NC_001493.1 + 124837 0.68 0.925295
Target:  5'- --gGGAGcgCGGUCgCGGGGAUGAcCCc -3'
miRNA:   3'- gagCCUCa-GUCAGaGCUCCUGCUuGG- -5'
3074 5' -53.3 NC_001493.1 + 46356 0.68 0.919728
Target:  5'- -gCGGAGcCcuUCUCcGGGugGGACCg -3'
miRNA:   3'- gaGCCUCaGucAGAGcUCCugCUUGG- -5'
3074 5' -53.3 NC_001493.1 + 56113 0.68 0.913917
Target:  5'- -cCGGGGU-GGUCUCGgaAGGACGAcGCg -3'
miRNA:   3'- gaGCCUCAgUCAGAGC--UCCUGCU-UGg -5'
3074 5' -53.3 NC_001493.1 + 13731 0.69 0.907864
Target:  5'- cCUCGGgacgGGUCGGUCUCG-GGccucuccaccGCGGuCCg -3'
miRNA:   3'- -GAGCC----UCAGUCAGAGCuCC----------UGCUuGG- -5'
3074 5' -53.3 NC_001493.1 + 129285 0.69 0.907864
Target:  5'- cCUCGGgacgGGUCGGUCUCG-GGccucuccaccGCGGuCCg -3'
miRNA:   3'- -GAGCC----UCAGUCAGAGCuCC----------UGCUuGG- -5'
3074 5' -53.3 NC_001493.1 + 49090 0.69 0.901572
Target:  5'- uUCGuGuucUguGUCUCGAGGACG-GCCa -3'
miRNA:   3'- gAGC-Cuc-AguCAGAGCUCCUGCuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.