miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30741 3' -51.6 NC_006552.1 + 12893 0.66 0.929401
Target:  5'- ---uCGGCGGCGugCGccuUGAuGUCGUCg -3'
miRNA:   3'- ucauGUCGCCGUugGC---ACU-UAGCAGg -5'
30741 3' -51.6 NC_006552.1 + 10119 0.66 0.929401
Target:  5'- aGGUuCuGCGGCAACaGUG---CGUCCa -3'
miRNA:   3'- -UCAuGuCGCCGUUGgCACuuaGCAGG- -5'
30741 3' -51.6 NC_006552.1 + 52539 0.66 0.911194
Target:  5'- --cGCA-UGGCGACUGgugGAacGUCGUCCu -3'
miRNA:   3'- ucaUGUcGCCGUUGGCa--CU--UAGCAGG- -5'
30741 3' -51.6 NC_006552.1 + 18759 0.66 0.911194
Target:  5'- uGUGCAaUGGCcuguugcuGCCGUGccgCGUCCg -3'
miRNA:   3'- uCAUGUcGCCGu-------UGGCACuuaGCAGG- -5'
30741 3' -51.6 NC_006552.1 + 45777 0.67 0.904567
Target:  5'- --aGCaAGCGGUAcGCCGUGuccggcUUGUCCg -3'
miRNA:   3'- ucaUG-UCGCCGU-UGGCACuu----AGCAGG- -5'
30741 3' -51.6 NC_006552.1 + 58955 0.67 0.897664
Target:  5'- -uUGCGGCGG-AACUGUGuagGUCGcCCc -3'
miRNA:   3'- ucAUGUCGCCgUUGGCACu--UAGCaGG- -5'
30741 3' -51.6 NC_006552.1 + 34511 0.68 0.850726
Target:  5'- cGGgcgGCGGCGGCAGCUc--GAUCugGUCCa -3'
miRNA:   3'- -UCa--UGUCGCCGUUGGcacUUAG--CAGG- -5'
30741 3' -51.6 NC_006552.1 + 44891 0.69 0.785575
Target:  5'- gAGUugGGCaGCGGCCGgcgGAGUUG-CUg -3'
miRNA:   3'- -UCAugUCGcCGUUGGCa--CUUAGCaGG- -5'
30741 3' -51.6 NC_006552.1 + 32130 0.69 0.785575
Target:  5'- cGUACAGCGGCuuGCCgGUGcAUgCGcgCCa -3'
miRNA:   3'- uCAUGUCGCCGu-UGG-CACuUA-GCa-GG- -5'
30741 3' -51.6 NC_006552.1 + 8294 0.7 0.744545
Target:  5'- cGGUACAGC-GCGACC-UGAgcAUCGUUg -3'
miRNA:   3'- -UCAUGUCGcCGUUGGcACU--UAGCAGg -5'
30741 3' -51.6 NC_006552.1 + 42998 0.71 0.700573
Target:  5'- uGGU-CGGCGGCGACCuUGGucuucacccgggcAUCGUCg -3'
miRNA:   3'- -UCAuGUCGCCGUUGGcACU-------------UAGCAGg -5'
30741 3' -51.6 NC_006552.1 + 28023 0.71 0.689645
Target:  5'- gAGUACGGCGGCGcGCCGgucuUGGucaccaccagcuuGUCGcCCa -3'
miRNA:   3'- -UCAUGUCGCCGU-UGGC----ACU-------------UAGCaGG- -5'
30741 3' -51.6 NC_006552.1 + 26526 0.73 0.580154
Target:  5'- --aGCAGCGGCGgcGCCG-GggU-GUCCa -3'
miRNA:   3'- ucaUGUCGCCGU--UGGCaCuuAgCAGG- -5'
30741 3' -51.6 NC_006552.1 + 56550 0.76 0.4043
Target:  5'- --cACGGCGGCAAguggcugcucgccCCGUGGAUCaUCCa -3'
miRNA:   3'- ucaUGUCGCCGUU-------------GGCACUUAGcAGG- -5'
30741 3' -51.6 NC_006552.1 + 44792 1.14 0.001534
Target:  5'- gAGUACAGCGGCAACCGUGAAUCGUCCg -3'
miRNA:   3'- -UCAUGUCGCCGUUGGCACUUAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.