miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30741 5' -57.1 NC_006552.1 + 10811 0.66 0.683177
Target:  5'- gGCGAACGaGUaCUGCAca--GGCGGUUg -3'
miRNA:   3'- -CGCUUGC-CG-GACGUuacgCCGCCAGu -5'
30741 5' -57.1 NC_006552.1 + 43868 0.66 0.672492
Target:  5'- cGCGAcuaACuGGCCcaUGCGGUGgaccaGGCGGUg- -3'
miRNA:   3'- -CGCU---UG-CCGG--ACGUUACg----CCGCCAgu -5'
30741 5' -57.1 NC_006552.1 + 38094 0.66 0.66177
Target:  5'- -gGAACGGCaggacaGCAGccugguacUGCGGCGG-CAu -3'
miRNA:   3'- cgCUUGCCGga----CGUU--------ACGCCGCCaGU- -5'
30741 5' -57.1 NC_006552.1 + 64493 0.66 0.651021
Target:  5'- cGCuGGCGGCCUgGCAG-GCGG-GGUg- -3'
miRNA:   3'- -CGcUUGCCGGA-CGUUaCGCCgCCAgu -5'
30741 5' -57.1 NC_006552.1 + 13172 0.66 0.644563
Target:  5'- cGCGGGCGuuCUGCGuacgcucgaAUGCcuggcggaacucgucGGCGGUCGc -3'
miRNA:   3'- -CGCUUGCcgGACGU---------UACG---------------CCGCCAGU- -5'
30741 5' -57.1 NC_006552.1 + 33740 0.66 0.640256
Target:  5'- cGCcAACcGCCaGCGcgGCGGCGG-CAu -3'
miRNA:   3'- -CGcUUGcCGGaCGUuaCGCCGCCaGU- -5'
30741 5' -57.1 NC_006552.1 + 31892 0.66 0.629484
Target:  5'- aGCGGcuuCGGCCaGCGcgGCG-CGGUUc -3'
miRNA:   3'- -CGCUu--GCCGGaCGUuaCGCcGCCAGu -5'
30741 5' -57.1 NC_006552.1 + 39432 0.66 0.625175
Target:  5'- cGCGAucuGCGGCCggaacgcuucggaGC-AUGCG-CGGUCGg -3'
miRNA:   3'- -CGCU---UGCCGGa------------CGuUACGCcGCCAGU- -5'
30741 5' -57.1 NC_006552.1 + 37826 0.67 0.618713
Target:  5'- cGCGAucugggcgcCGGCCUGCAuggcacugaAUGCGGCcugCAc -3'
miRNA:   3'- -CGCUu--------GCCGGACGU---------UACGCCGccaGU- -5'
30741 5' -57.1 NC_006552.1 + 60047 0.67 0.607955
Target:  5'- cGUGGuugGGgCUGCGcucgaggccUGCGGCGGUCGg -3'
miRNA:   3'- -CGCUug-CCgGACGUu--------ACGCCGCCAGU- -5'
30741 5' -57.1 NC_006552.1 + 34820 0.67 0.607955
Target:  5'- uCGGACGGCCgag---GCGGCgcaGGUCGu -3'
miRNA:   3'- cGCUUGCCGGacguuaCGCCG---CCAGU- -5'
30741 5' -57.1 NC_006552.1 + 50421 0.67 0.597216
Target:  5'- gGUGGGCGGCCUGauugGCGGCc---- -3'
miRNA:   3'- -CGCUUGCCGGACguuaCGCCGccagu -5'
30741 5' -57.1 NC_006552.1 + 27223 0.67 0.586506
Target:  5'- -gGAAUGGUCgGCAu--CGGCGGUCc -3'
miRNA:   3'- cgCUUGCCGGaCGUuacGCCGCCAGu -5'
30741 5' -57.1 NC_006552.1 + 49184 0.67 0.586506
Target:  5'- uGCG-GCGGCCUG--GUcCGGCuGGUCAg -3'
miRNA:   3'- -CGCuUGCCGGACguUAcGCCG-CCAGU- -5'
30741 5' -57.1 NC_006552.1 + 15336 0.67 0.586506
Target:  5'- cGCGAcgcACGGCCUGCAGcGCcgcaGGCuGcUCGa -3'
miRNA:   3'- -CGCU---UGCCGGACGUUaCG----CCGcC-AGU- -5'
30741 5' -57.1 NC_006552.1 + 12228 0.68 0.544107
Target:  5'- cGCGGGCGGCCauccgcGCAcgGCGcuCGGUg- -3'
miRNA:   3'- -CGCUUGCCGGa-----CGUuaCGCc-GCCAgu -5'
30741 5' -57.1 NC_006552.1 + 64732 0.68 0.544107
Target:  5'- aCGAcgugGCGGCgCUGCAG-GUGGCGcUCAa -3'
miRNA:   3'- cGCU----UGCCG-GACGUUaCGCCGCcAGU- -5'
30741 5' -57.1 NC_006552.1 + 15473 0.68 0.543058
Target:  5'- aGCGAuacagccgguuguGCGGCUUGCGccUGCuGCGcGUCAg -3'
miRNA:   3'- -CGCU-------------UGCCGGACGUu-ACGcCGC-CAGU- -5'
30741 5' -57.1 NC_006552.1 + 50098 0.68 0.533654
Target:  5'- cGCGGGCGGaacgCgcaGCAcgGCGGCGcGUUg -3'
miRNA:   3'- -CGCUUGCCg---Ga--CGUuaCGCCGC-CAGu -5'
30741 5' -57.1 NC_006552.1 + 45009 0.69 0.482594
Target:  5'- uCGGccAgGGCCUGCucaGCGGCGGaCAa -3'
miRNA:   3'- cGCU--UgCCGGACGuuaCGCCGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.