miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30742 3' -61.6 NC_006552.1 + 61188 0.66 0.452752
Target:  5'- cGGCAagccuGCGCCgauaucgGCUGCUg-GGGCGAc -3'
miRNA:   3'- cCCGU-----CGCGGa------CGACGGagCCUGCUc -5'
30742 3' -61.6 NC_006552.1 + 48320 0.66 0.452752
Target:  5'- cGGCGGCGaCCguUGCUGCCU-GGAa--- -3'
miRNA:   3'- cCCGUCGC-GG--ACGACGGAgCCUgcuc -5'
30742 3' -61.6 NC_006552.1 + 20440 0.66 0.434202
Target:  5'- aGGGCcaGGC-CCUGCUGCa-CGG-CGAa -3'
miRNA:   3'- -CCCG--UCGcGGACGACGgaGCCuGCUc -5'
30742 3' -61.6 NC_006552.1 + 1928 0.66 0.425094
Target:  5'- cGGCGGCGUC-GUUGUCgggagugUGGACGAc -3'
miRNA:   3'- cCCGUCGCGGaCGACGGa------GCCUGCUc -5'
30742 3' -61.6 NC_006552.1 + 20669 0.66 0.407224
Target:  5'- cGGGCgaacAGCGCCUGCU-CgaUGGGCGc- -3'
miRNA:   3'- -CCCG----UCGCGGACGAcGgaGCCUGCuc -5'
30742 3' -61.6 NC_006552.1 + 42072 0.66 0.406343
Target:  5'- cGGCGGUGaucugcguccgcuCCUGCUGCUcCaGGCGAGc -3'
miRNA:   3'- cCCGUCGC-------------GGACGACGGaGcCUGCUC- -5'
30742 3' -61.6 NC_006552.1 + 33399 0.68 0.335998
Target:  5'- cGGCGGCGCUUagacugcgccgaggcGCUcGCCgUGGACGAu -3'
miRNA:   3'- cCCGUCGCGGA---------------CGA-CGGaGCCUGCUc -5'
30742 3' -61.6 NC_006552.1 + 39632 0.68 0.331381
Target:  5'- cGGGCgggaugcccAGUGCCUGCUGgcgacgcagcaaCUCGGuauCGAGu -3'
miRNA:   3'- -CCCG---------UCGCGGACGACg-----------GAGCCu--GCUC- -5'
30742 3' -61.6 NC_006552.1 + 44895 0.68 0.325299
Target:  5'- uGGGCAGCgGCCggcggaguUGCugacccauUGCCUCGG-CGGu -3'
miRNA:   3'- -CCCGUCG-CGG--------ACG--------ACGGAGCCuGCUc -5'
30742 3' -61.6 NC_006552.1 + 45917 0.68 0.32304
Target:  5'- -aGCAGCGCCUGCUGCgaguucagcccccaCUCGaGCGc- -3'
miRNA:   3'- ccCGUCGCGGACGACG--------------GAGCcUGCuc -5'
30742 3' -61.6 NC_006552.1 + 11332 0.68 0.310458
Target:  5'- cGGCGGCGUCgaugGCUuCCUCGGugACGGc -3'
miRNA:   3'- cCCGUCGCGGa---CGAcGGAGCC--UGCUc -5'
30742 3' -61.6 NC_006552.1 + 15641 0.7 0.256271
Target:  5'- uGGUGGCGCugcucaucCUGCUGguCCUCGG-CGAGg -3'
miRNA:   3'- cCCGUCGCG--------GACGAC--GGAGCCuGCUC- -5'
30742 3' -61.6 NC_006552.1 + 5683 0.7 0.238041
Target:  5'- cGGGCAGCGCUcucgGCUGaUUCGcGGCGGu -3'
miRNA:   3'- -CCCGUCGCGGa---CGACgGAGC-CUGCUc -5'
30742 3' -61.6 NC_006552.1 + 15492 0.7 0.237453
Target:  5'- cGGCuuGCGCCUGCugcgcgucagccuUGCCUUGGGCc-- -3'
miRNA:   3'- cCCGu-CGCGGACG-------------ACGGAGCCUGcuc -5'
30742 3' -61.6 NC_006552.1 + 13304 0.72 0.189793
Target:  5'- cGGGCuugGGUGCCU-CUGCCgguUCGGACuGGGg -3'
miRNA:   3'- -CCCG---UCGCGGAcGACGG---AGCCUG-CUC- -5'
30742 3' -61.6 NC_006552.1 + 62757 0.73 0.154337
Target:  5'- cGGGCGcugccGCGCCUGCgagcgacGCCU-GGACGAc -3'
miRNA:   3'- -CCCGU-----CGCGGACGa------CGGAgCCUGCUc -5'
30742 3' -61.6 NC_006552.1 + 44563 0.93 0.005058
Target:  5'- cGGGCAGCGCCUGCUGCCU-GGcACGAGu -3'
miRNA:   3'- -CCCGUCGCGGACGACGGAgCC-UGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.