miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30742 5' -55.2 NC_006552.1 + 9622 0.66 0.743179
Target:  5'- uGCUCuacgauGUAGGCGGCAGccucacgcUGAuuuGCGCUc- -3'
miRNA:   3'- gCGAG------CAUCCGCCGUU--------ACU---UGCGGua -5'
30742 5' -55.2 NC_006552.1 + 59402 0.66 0.732673
Target:  5'- gCGCggcagCGUcAGGCGGUGgcggcGUGAACGCgGa -3'
miRNA:   3'- -GCGa----GCA-UCCGCCGU-----UACUUGCGgUa -5'
30742 5' -55.2 NC_006552.1 + 44207 0.66 0.711369
Target:  5'- gCGCUCGUggcgcAGGUGGCGAUc-ACGCa-- -3'
miRNA:   3'- -GCGAGCA-----UCCGCCGUUAcuUGCGgua -5'
30742 5' -55.2 NC_006552.1 + 32727 0.67 0.688667
Target:  5'- gCGCUCGaacAGGUcGCGAUGGuugaggaaucgacGCGCCAg -3'
miRNA:   3'- -GCGAGCa--UCCGcCGUUACU-------------UGCGGUa -5'
30742 5' -55.2 NC_006552.1 + 20656 0.67 0.672297
Target:  5'- gCGUUCGcGGGCacgGGCGAacagcgccugcucgaUGGGCGCCGg -3'
miRNA:   3'- -GCGAGCaUCCG---CCGUU---------------ACUUGCGGUa -5'
30742 5' -55.2 NC_006552.1 + 55493 0.67 0.656941
Target:  5'- aGCgaagGGGCGGCGGUGAACgaGUCAc -3'
miRNA:   3'- gCGagcaUCCGCCGUUACUUG--CGGUa -5'
30742 5' -55.2 NC_006552.1 + 33751 0.68 0.595344
Target:  5'- aGCgCGgcGGCGGCAuugcuguugagcaGAACGCCGg -3'
miRNA:   3'- gCGaGCauCCGCCGUua-----------CUUGCGGUa -5'
30742 5' -55.2 NC_006552.1 + 10583 0.69 0.54325
Target:  5'- aCGCUCGUcguugauggcauugAGGUGGgccauauCGAUGAugGCGCCAg -3'
miRNA:   3'- -GCGAGCA--------------UCCGCC-------GUUACU--UGCGGUa -5'
30742 5' -55.2 NC_006552.1 + 34525 0.69 0.536833
Target:  5'- aGCUCGaucugguccaugUAGGUGGCGAUGGAguCGaCCAc -3'
miRNA:   3'- gCGAGC------------AUCCGCCGUUACUU--GC-GGUa -5'
30742 5' -55.2 NC_006552.1 + 17662 0.7 0.47435
Target:  5'- aGUUCGUuGGCGGCGAgGAagcgcGCGCCc- -3'
miRNA:   3'- gCGAGCAuCCGCCGUUaCU-----UGCGGua -5'
30742 5' -55.2 NC_006552.1 + 44597 1.06 0.001662
Target:  5'- gCGCUCGUAGGCGGCAAUGAACGCCAUg -3'
miRNA:   3'- -GCGAGCAUCCGCCGUUACUUGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.