miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30745 5' -56 NC_006552.1 + 2064 0.66 0.703247
Target:  5'- gCGCCGGCGucgUGCGCGGC--CUGCUg -3'
miRNA:   3'- -GCGGUUGUcaaGCGCGUCGuaGGCGA- -5'
30745 5' -56 NC_006552.1 + 5422 0.66 0.713904
Target:  5'- uCGCCAuCAGgcugCGCGCcAGUuguucgCCGCg -3'
miRNA:   3'- -GCGGUuGUCaa--GCGCG-UCGua----GGCGa -5'
30745 5' -56 NC_006552.1 + 5608 0.68 0.573029
Target:  5'- gGCUGACGGUcaGCGCGGCAaCCaGCa -3'
miRNA:   3'- gCGGUUGUCAagCGCGUCGUaGG-CGa -5'
30745 5' -56 NC_006552.1 + 7899 0.66 0.724481
Target:  5'- gCGCCAGgAaa-CGCGCcacGCAUCUGCUc -3'
miRNA:   3'- -GCGGUUgUcaaGCGCGu--CGUAGGCGA- -5'
30745 5' -56 NC_006552.1 + 8139 0.75 0.247245
Target:  5'- gCGCCAGguGgUCGCGCAGUAU-CGCg -3'
miRNA:   3'- -GCGGUUguCaAGCGCGUCGUAgGCGa -5'
30745 5' -56 NC_006552.1 + 9148 0.66 0.669825
Target:  5'- cCGCCGucacccuGCGcGUagcCGCucGCGGCAUCCGCg -3'
miRNA:   3'- -GCGGU-------UGU-CAa--GCG--CGUCGUAGGCGa -5'
30745 5' -56 NC_006552.1 + 11439 0.67 0.660046
Target:  5'- gGCuCGGCGGgcgccUCGCGCAGCGcuacgaacUCgCGCa -3'
miRNA:   3'- gCG-GUUGUCa----AGCGCGUCGU--------AG-GCGa -5'
30745 5' -56 NC_006552.1 + 12220 0.7 0.439403
Target:  5'- gGCCu-CAGcgCGgGCGGcCAUCCGCg -3'
miRNA:   3'- gCGGuuGUCaaGCgCGUC-GUAGGCGa -5'
30745 5' -56 NC_006552.1 + 12703 0.69 0.509484
Target:  5'- aGCCucCAGUUCGuCGUAGCGaauaCGCUg -3'
miRNA:   3'- gCGGuuGUCAAGC-GCGUCGUag--GCGA- -5'
30745 5' -56 NC_006552.1 + 15021 0.66 0.680658
Target:  5'- gCGCCAguggcuucagcacGCGGggCuGCGCAGCAggCUGUUg -3'
miRNA:   3'- -GCGGU-------------UGUCaaG-CGCGUCGUa-GGCGA- -5'
30745 5' -56 NC_006552.1 + 18062 0.72 0.356311
Target:  5'- gGCCAGCAGguucuccacugCGCGCugguuuugGGCAcUCCGCUg -3'
miRNA:   3'- gCGGUUGUCaa---------GCGCG--------UCGU-AGGCGA- -5'
30745 5' -56 NC_006552.1 + 18728 0.66 0.724481
Target:  5'- uGUCGACGGUauaUCGgGCAGUGgUCCGg- -3'
miRNA:   3'- gCGGUUGUCA---AGCgCGUCGU-AGGCga -5'
30745 5' -56 NC_006552.1 + 22056 0.71 0.420401
Target:  5'- gGCCAguGCuGUcgcugaugCGCGCGGCAUCCaGCa -3'
miRNA:   3'- gCGGU--UGuCAa-------GCGCGUCGUAGG-CGa -5'
30745 5' -56 NC_006552.1 + 26312 0.66 0.713904
Target:  5'- gGCCAACAGcagcUCGC-CAcCAUUCGCUc -3'
miRNA:   3'- gCGGUUGUCa---AGCGcGUcGUAGGCGA- -5'
30745 5' -56 NC_006552.1 + 26446 0.67 0.616433
Target:  5'- gCGCCGACuccuggGGgcCGCGCAGCcacgccacagCCGCg -3'
miRNA:   3'- -GCGGUUG------UCaaGCGCGUCGua--------GGCGa -5'
30745 5' -56 NC_006552.1 + 32350 0.66 0.724481
Target:  5'- gCGCaCGGCGGcUUCGCGCAcuGCGU-CGUUg -3'
miRNA:   3'- -GCG-GUUGUC-AAGCGCGU--CGUAgGCGA- -5'
30745 5' -56 NC_006552.1 + 36179 0.71 0.383934
Target:  5'- uCGCCAGCA--UCGC-CGGCAcCCGCg -3'
miRNA:   3'- -GCGGUUGUcaAGCGcGUCGUaGGCGa -5'
30745 5' -56 NC_006552.1 + 38365 0.69 0.530379
Target:  5'- uGCCAgcaGCAGUUCGCccacCAGgGUCCGg- -3'
miRNA:   3'- gCGGU---UGUCAAGCGc---GUCgUAGGCga -5'
30745 5' -56 NC_006552.1 + 41408 0.69 0.530379
Target:  5'- aGCCAGgcagcgcgcCAGUUCG-GCcGCGUCCGUg -3'
miRNA:   3'- gCGGUU---------GUCAAGCgCGuCGUAGGCGa -5'
30745 5' -56 NC_006552.1 + 42014 0.68 0.551579
Target:  5'- uGCgu-CAGUUCGCGU-GCAUCUGCc -3'
miRNA:   3'- gCGguuGUCAAGCGCGuCGUAGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.