miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30746 3' -54.1 NC_006552.1 + 41573 0.66 0.76934
Target:  5'- gGGUACCGGCuugaaGGCAuuGCCacugguacuggcgauGGUGUGUAGc -3'
miRNA:   3'- gUCAUGGCCG-----UCGU--UGG---------------CUACGCAUU- -5'
30746 3' -54.1 NC_006552.1 + 56849 0.67 0.744338
Target:  5'- cCAGggauUCGGCAGCG-CCGcgGCGa-- -3'
miRNA:   3'- -GUCau--GGCCGUCGUuGGCuaCGCauu -5'
30746 3' -54.1 NC_006552.1 + 48318 0.67 0.701258
Target:  5'- ----cCCGGCGGCGACCGuUGCu--- -3'
miRNA:   3'- gucauGGCCGUCGUUGGCuACGcauu -5'
30746 3' -54.1 NC_006552.1 + 4763 0.68 0.690286
Target:  5'- gCGGUGCCGGCuGCGucACCuGcgGCGc-- -3'
miRNA:   3'- -GUCAUGGCCGuCGU--UGG-CuaCGCauu -5'
30746 3' -54.1 NC_006552.1 + 28740 0.68 0.667071
Target:  5'- aAGccgGCCGGCGGCGaaggcauGCCGAUG-GUGc -3'
miRNA:   3'- gUCa--UGGCCGUCGU-------UGGCUACgCAUu -5'
30746 3' -54.1 NC_006552.1 + 52947 0.68 0.645937
Target:  5'- ---cGCCGGCGcccGCcGCCGGUGCGg-- -3'
miRNA:   3'- gucaUGGCCGU---CGuUGGCUACGCauu -5'
30746 3' -54.1 NC_006552.1 + 45249 0.68 0.634789
Target:  5'- --uUGCCGGCA---ACCGAUGCGUu- -3'
miRNA:   3'- gucAUGGCCGUcguUGGCUACGCAuu -5'
30746 3' -54.1 NC_006552.1 + 21394 0.69 0.62364
Target:  5'- -cGUGCCGGcCGGuCAGgCGAaGCGUGAa -3'
miRNA:   3'- guCAUGGCC-GUC-GUUgGCUaCGCAUU- -5'
30746 3' -54.1 NC_006552.1 + 24274 0.69 0.579216
Target:  5'- gCAcUACCGGCAGCGGCaua-GCGUAGa -3'
miRNA:   3'- -GUcAUGGCCGUCGUUGgcuaCGCAUU- -5'
30746 3' -54.1 NC_006552.1 + 25793 0.7 0.546336
Target:  5'- aGGUACCGGCA-CGGCCGGUGa---- -3'
miRNA:   3'- gUCAUGGCCGUcGUUGGCUACgcauu -5'
30746 3' -54.1 NC_006552.1 + 30455 0.7 0.524747
Target:  5'- gUAGUACCGGCuaacuccuGCGAUCGccugugaguaGUGCGUAc -3'
miRNA:   3'- -GUCAUGGCCGu-------CGUUGGC----------UACGCAUu -5'
30746 3' -54.1 NC_006552.1 + 41986 1.05 0.002344
Target:  5'- gCAGUACCGGCAGCAACCGAUGCGUAAc -3'
miRNA:   3'- -GUCAUGGCCGUCGUUGGCUACGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.