Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 41986 | 1.05 | 0.002344 |
Target: 5'- gCAGUACCGGCAGCAACCGAUGCGUAAc -3' miRNA: 3'- -GUCAUGGCCGUCGUUGGCUACGCAUU- -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 30455 | 0.7 | 0.524747 |
Target: 5'- gUAGUACCGGCuaacuccuGCGAUCGccugugaguaGUGCGUAc -3' miRNA: 3'- -GUCAUGGCCGu-------CGUUGGC----------UACGCAUu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 25793 | 0.7 | 0.546336 |
Target: 5'- aGGUACCGGCA-CGGCCGGUGa---- -3' miRNA: 3'- gUCAUGGCCGUcGUUGGCUACgcauu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 24274 | 0.69 | 0.579216 |
Target: 5'- gCAcUACCGGCAGCGGCaua-GCGUAGa -3' miRNA: 3'- -GUcAUGGCCGUCGUUGgcuaCGCAUU- -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 21394 | 0.69 | 0.62364 |
Target: 5'- -cGUGCCGGcCGGuCAGgCGAaGCGUGAa -3' miRNA: 3'- guCAUGGCC-GUC-GUUgGCUaCGCAUU- -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 45249 | 0.68 | 0.634789 |
Target: 5'- --uUGCCGGCA---ACCGAUGCGUu- -3' miRNA: 3'- gucAUGGCCGUcguUGGCUACGCAuu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 52947 | 0.68 | 0.645937 |
Target: 5'- ---cGCCGGCGcccGCcGCCGGUGCGg-- -3' miRNA: 3'- gucaUGGCCGU---CGuUGGCUACGCauu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 28740 | 0.68 | 0.667071 |
Target: 5'- aAGccgGCCGGCGGCGaaggcauGCCGAUG-GUGc -3' miRNA: 3'- gUCa--UGGCCGUCGU-------UGGCUACgCAUu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 4763 | 0.68 | 0.690286 |
Target: 5'- gCGGUGCCGGCuGCGucACCuGcgGCGc-- -3' miRNA: 3'- -GUCAUGGCCGuCGU--UGG-CuaCGCauu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 48318 | 0.67 | 0.701258 |
Target: 5'- ----cCCGGCGGCGACCGuUGCu--- -3' miRNA: 3'- gucauGGCCGUCGUUGGCuACGcauu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 56849 | 0.67 | 0.744338 |
Target: 5'- cCAGggauUCGGCAGCG-CCGcgGCGa-- -3' miRNA: 3'- -GUCau--GGCCGUCGUuGGCuaCGCauu -5' |
|||||||
30746 | 3' | -54.1 | NC_006552.1 | + | 41573 | 0.66 | 0.76934 |
Target: 5'- gGGUACCGGCuugaaGGCAuuGCCacugguacuggcgauGGUGUGUAGc -3' miRNA: 3'- gUCAUGGCCG-----UCGU--UGG---------------CUACGCAUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home