miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30746 5' -55 NC_006552.1 + 7909 0.67 0.719361
Target:  5'- --aCGCGccacGCAUCUGCuCGgcCAUCUGGu -3'
miRNA:   3'- caaGCGCa---CGUAGACG-GCa-GUGGACC- -5'
30746 5' -55 NC_006552.1 + 15257 0.69 0.611379
Target:  5'- ---gGCGU-CGUCUGCCGUccgCugCUGGu -3'
miRNA:   3'- caagCGCAcGUAGACGGCA---GugGACC- -5'
30746 5' -55 NC_006552.1 + 14117 0.7 0.557423
Target:  5'- -gUCGCGcGCAUCcggcGCCGUCAUgUGa -3'
miRNA:   3'- caAGCGCaCGUAGa---CGGCAGUGgACc -5'
30746 5' -55 NC_006552.1 + 8159 0.7 0.523592
Target:  5'- -aUCGCGgcccccuccugcGCAUCgGCCGcguccaUCACCUGGu -3'
miRNA:   3'- caAGCGCa-----------CGUAGaCGGC------AGUGGACC- -5'
30746 5' -55 NC_006552.1 + 42020 1.1 0.001141
Target:  5'- aGUUCGCGUGCAUCUGCCGUCACCUGGu -3'
miRNA:   3'- -CAAGCGCACGUAGACGGCAGUGGACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.